DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12004 and AT3G05940

DIOPT Version :9

Sequence 1:NP_001097474.1 Gene:CG12004 / 38185 FlyBaseID:FBgn0035236 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_187245.2 Gene:AT3G05940 / 819764 AraportID:AT3G05940 Length:422 Species:Arabidopsis thaliana


Alignment Length:409 Identity:154/409 - (37%)
Similarity:215/409 - (52%) Gaps:68/409 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 VLAGVCVWAALFITCQQIYQHLRWYTNPQEQRWIVRILFIVPIYATYSWISLLFFNSDNVYIYFF 132
            :||.:|...|:.:....||:||..||.|..||:||||:|:||:||..|:::|:...|.   |||.
plant    11 ILAFLCTVGAIALALFHIYKHLLNYTEPIYQRYIVRIVFMVPVYALMSFLALVLPKSS---IYFN 72

  Fly   133 TVRDCYEAFVIYNFLSLCYEYLGGEGNIMSEIRGKPIKTSCLYGTCCLKGKTYTIGFLRFCKQAT 197
            ::|:.|||:|||||||||..::||.|:::..:.|:.:|.|....|||:........|:|.|||..
plant    73 SIREVYEAWVIYNFLSLCLAWVGGPGSVVISLTGRSLKPSWHLMTCCIPPLPLDGRFIRRCKQGC 137

  Fly   198 LQFCLVKPLVAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALYGLYLFYFATRDLLTP 262
            |||.::||::..:.:.|.|.|.|.||::|.|..|:|:||||.||.::|||.|.|||.|.:|||.|
plant   138 LQFVILKPILVAVTLVLYAKGKYKDGNFSPDQSYLYLTIIYTISYTVALYALVLFYVACKDLLQP 202

  Fly   263 FEPVLKFCTIKSVIFLSFWQGVGLAILEKANVISPIVDSAGTVTVEPGTVSAGYQNFFICIEMLF 327
            |.||.||..||||:||::||||.:.:..|:..|....:            :|.:|||.||:|||.
plant   203 FNPVPKFVIIKSVVFLTYWQGVLVFLFAKSGFIRDEEE------------AALFQNFIICVEMLI 255

  Fly   328 AAIALRYAFPYQVYARSCISDGHGRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQY-- 390
            ||.|..|||||:.||.:.:...       :|.|.||...:...|...|.:|.|.|.|..|..|  
plant   256 AAAAHFYAFPYKEYAEANVGGA-------RSFSGSLAHALMLNDFYHDTVHQFAPTYHDYVLYNH 313

  Fly   391 SSGG-----------------------KNSR-------GIRVSS--------------YDPDDPS 411
            :.||                       ||..       |:.|||              |||..|.
plant   314 NDGGEEGTRKYRARTFVPTGQEMDAVRKNKHMFGNKIDGVSVSSQSSETSTPKTSGVTYDPARPE 378

  Fly   412 SGAAAGGMQASQPTSGGYD 430
            |..::..:.||...|..||
plant   379 SMKSSLLVDASDSVSTMYD 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12004NP_001097474.1 Solute_trans_a 66..339 CDD:397604 121/270 (45%)
AT3G05940NP_187245.2 Solute_trans_a 9..268 CDD:397604 122/271 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 237 1.000 Domainoid score I613
eggNOG 1 0.900 - - E1_KOG2641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 257 1.000 Inparanoid score I992
OMA 1 1.010 - - QHG55062
OrthoDB 1 1.010 - - D462913at2759
OrthoFinder 1 1.000 - - FOG0000529
OrthoInspector 1 1.000 - - otm2827
orthoMCL 1 0.900 - - OOG6_100407
Panther 1 1.100 - - O PTHR23423
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1310
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.840

Return to query results.
Submit another query.