DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and Hnrnpf

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_598595.1 Gene:Hnrnpf / 98758 MGIID:2138741 Length:415 Species:Mus musculus


Alignment Length:461 Identity:89/461 - (19%)
Similarity:159/461 - (34%) Gaps:152/461 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IIRLQNLPWTANARDIRNFFSGLSIPEG--GVHII----GGEMGDAFIAFSTDEDARCAMLKDRE 62
            :::|:.|||:.:..|::||.|..:|.:|  |||.|    |.:.|:||:...:::|.:.|:.||||
Mouse    12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRE 76

  Fly    63 KLMEIQVRLLLSSRAEMQKVIETA--RKAASAQAPVSVPVPMPV---------------VVPVTA 110
            .:....:.:..|.|.||..|::.:  ..|.||.........:|.               :||   
Mouse    77 SMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVP--- 138

  Fly   111 AKVAGPAAPLPPIIGGLNTFLGQGQVKGVATGTVPSFLTYQQQAGITLSDVTGRRSRSRSSSSDD 175
               .|...|:.|          :|::.|.|      |:.:..|                      
Mouse   139 ---NGITLPVDP----------EGKITGEA------FVQFASQ---------------------- 162

  Fly   176 SDRERERDRQRERERGRKRRSDRLDKSQER-------ELKMVAGGGALPSPWAQPPQNQLPAVGL 233
              ...|:...:.:||...|..:....|||.       .||.::  ...|.|:.:|...: ..:|:
Mouse   163 --ELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMS--VQRPGPYDRPGTAR-RYIGI 222

  Fly   234 GLNMGLNLNLPQIPSLQS------YTTSTTTTNVTNNYNLEPSATSVQLLTALQQVSSGSAAPAQ 292
            ....||:       .::|      |......:.:::.|..........|...|    ||      
Mouse   223 VKQAGLD-------RMRSGAYSAGYGGYEEYSGLSDGYGFTTDLFGRDLSYCL----SG------ 270

  Fly   293 PSKSESEPIAFASVNPYAQMYPQLFQQQQMLLQQQQTQAKVSPTMGGSPGGGSTPQVVADTCYIR 357
                               ||...:...:..:|.         |.|              .| :.
Mouse   271 -------------------MYDHRYGDSEFTVQS---------TTG--------------HC-VH 292

  Fly   358 MSGMCQNTSYSDIRKYFQGMYIPHNGIKIMM---VNGSRTGVAYVEFSRVSSAQKAVQRNNTMFR 419
            |.|:....:.:||..:|.    |.|.:::.:   .:|..||.|.|||:....|..|:.::....:
Mouse   293 MRGLPYKATENDIYNFFS----PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQ 353

  Fly   420 DRLIQI 425
            .|.|::
Mouse   354 HRYIEL 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932 24/76 (32%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 18/72 (25%)
RRM_SF 478..549 CDD:409669
RRM_SF 700..773 CDD:409669
RRM5_RBM12_like 909..983 CDD:409937
HnrnpfNP_598595.1 RRM1_hnRNPH_hnRNPH2_hnRNPF 10..88 CDD:410128 24/75 (32%)
Interaction with RNA. /evidence=ECO:0000250 81..86 0/4 (0%)
RRM2_hnRNPH_hnRNPH2_hnRNPF 103..192 CDD:410130 21/134 (16%)
Interaction with RNA. /evidence=ECO:0000250 179..184 1/4 (25%)
zf-RNPHF 255..290 CDD:429823 9/86 (10%)
RRM3_hnRNPH_CRSF1_like 289..363 CDD:409929 19/76 (25%)
Interaction with RNA. /evidence=ECO:0000250 355..360 2/5 (40%)
Blue background indicates that the domain is not in the aligned region.

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