DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and AT5G66010

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_201402.3 Gene:AT5G66010 / 836731 AraportID:AT5G66010 Length:255 Species:Arabidopsis thaliana


Alignment Length:89 Identity:28/89 - (31%)
Similarity:50/89 - (56%) Gaps:4/89 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLKDREKL 64
            :::::.||::.|...|..||||..:.:|.|.::    |...|:||:.|.|.|:||.||.||:..:
plant   167 VLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSI 231

  Fly    65 MEIQVRLLLSSRAEMQKVIETARK 88
            ....|.|..::|.|.::....:|:
plant   232 GSRYVELFPTTREEARRAEARSRQ 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932 25/74 (34%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699
RRM_SF 478..549 CDD:409669
RRM_SF 700..773 CDD:409669
RRM5_RBM12_like 909..983 CDD:409937
AT5G66010NP_201402.3 RRM_hnRNPH_ESRPs_RBM12_like 50..119 CDD:409699
RRM_hnRNPH_ESRPs_RBM12_like 167..239 CDD:409699 24/71 (34%)
Blue background indicates that the domain is not in the aligned region.

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