DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and rbm12ba

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_001071207.1 Gene:rbm12ba / 777631 ZFINID:ZDB-GENE-061103-58 Length:523 Species:Danio rerio


Alignment Length:579 Identity:125/579 - (21%)
Similarity:229/579 - (39%) Gaps:110/579 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VIIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGEMGDAFIAFSTDEDARCAMLKDREKLMEI 67
            |::|||.|...|.:.|||.||.||.||||||||||||||:|||.|.|:.:.:.||....:.:...
Zfish     4 VVLRLQGLNTEAGSEDIRRFFHGLHIPEGGVHIIGGEMGEAFIIFKTEREGQLAMRYSGKTIKGS 68

  Fly    68 QVRLLLSSRAEMQKVIETARKAASAQAPVSVPVPMPV---VVPVTAAKVAGPAAPLPPIIGGL-- 127
            .|.|.:||.||:::.:|:..|.         |.|..:   |||  ::.....||.|..::|.:  
Zfish    69 SVSLHISSVAELKRKMESRLKK---------PKPTELETNVVP--SSPTDTNAALLLSLMGAIYG 122

  Fly   128 ----NTFLGQGQVK---GVATGTVPSFLTYQQQAGITLSDVTGRRSRSRSSSSDDSDRERERDRQ 185
                |....|||.:   |......|...|:         .:||::.        ::|.:...:.:
Zfish   123 LHSNNKDNQQGQTQQTPGNVNQNSPEMQTW---------PLTGKQM--------NTDAQHSLNHE 170

  Fly   186 RERERGRKRRSDRLDKSQERELKMVAGGGALPSPWAQPPQNQ----LPAVGLGLNMGLNLNLPQI 246
            ......:..|.:.|:.|:...|::.    ..|...|:....|    ||.:.:...:.|.|....:
Zfish   171 LASTEQQTGRGENLNLSKPGYLRLY----GFPDCVAKQEIFQFLRGLPVLEVITKVRLQLGWCCL 231

  Fly   247 PSLQSYTTSTTTTNVTN----NYNLEPSATSVQLLTALQQVSSGSAAPAQPSKSESEPIAFASVN 307
            ..|.|::.:......::    .:|:|......::.|...:.|.......:|..|..:..|..:.|
Zfish   232 VKLASFSDAEEGLKYSHRKFKEFNVEVRLAHEKMWTDAVEESKNCTQNLKPHSSSEQNEANNNRN 296

  Fly   308 PYAQMYPQLFQQQQMLLQQQQTQAKVSPTMGGSP----GGGSTPQVVADTCYIRMSGMCQNTSYS 368
            ..     :.|..:::..:|.      ||   |||    ....:||   ....:.::.:.:|.:.:
Zfish   297 AV-----RAFTNKRIAEEQP------SP---GSPKKFCRNDPSPQ---KEYSVIVNNLSRNITKT 344

  Fly   369 DIRKYFQGMYIPHNGIKIMMVN-GSRTGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQIVPVGDDE 432
            :|:..|....|.:..||.::.. |.||..|::.|........|::.|......:.|:::.:..:|
Zfish   345 EIKNIFGCHAIQNYRIKHLLNKWGERTSTAFITFDNSEDQASAMKMNGMNVGLKNIEVLSITKEE 409

  Fly   433 F--EMAEERASRQGQDGSRSHGNHNGGDRGERGGGAPVPVPRPVTNV------LYIEDLPQTTTE 489
            .  .:::.|..:..:                         |.|..|.      :|..:.|....:
Zfish   410 ILDILSKNRFVKSWR-------------------------PPPYGNTHLSMSCIYARNFPADVRK 449

  Fly   490 QDIMKMFSASYTVVDILLSPSPKNRRESV--AFVLFAREAEADSALQDTSKHYIGFRQL 546
            ::: |.|...|.:.|..:.....|:...:  |.|.|..:..|..|.:...|:::|.:.|
Zfish   450 EEV-KGFFMPYNIGDDAVRLLVDNQGNGIGEAIVEFRFQNIAKQAQRLHGKYFMGAKIL 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932 36/71 (51%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 14/70 (20%)
RRM_SF 478..549 CDD:409669 15/71 (21%)
RRM_SF 700..773 CDD:409669
RRM5_RBM12_like 909..983 CDD:409937
rbm12baNP_001071207.1 RRM1_RBM12_like 3..76 CDD:409932 36/71 (51%)
RRM_SF 191..269 CDD:473069 13/81 (16%)
RRM_SF 332..402 CDD:409669 14/69 (20%)
RRM_SF 437..511 CDD:473069 15/72 (21%)
Blue background indicates that the domain is not in the aligned region.

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