DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and rbm12b.2

DIOPT Version :9

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:XP_012820298.2 Gene:rbm12b.2 / 734026 XenbaseID:XB-GENE-5751350 Length:695 Species:Xenopus tropicalis


Alignment Length:1046 Identity:189/1046 - (18%)
Similarity:308/1046 - (29%) Gaps:466/1046 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSVIIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGEMGDAFIAFSTDEDARCAMLKDREKLM 65
            |||:|:||.|...||:.|||.|||.|.||:|.::|.||:.|:|||.||:.||||.|:......|.
 Frog    55 MSVVIKLQGLSIEANSIDIRQFFSNLDIPKGYIYITGGKYGEAFIIFSSYEDARRAISYSGRPLK 119

  Fly    66 EIQVRLLLSSRAEMQKVIETARKAASAQAPVSVPVPMPVVVPVTAAKVAGPAAPLPPIIGGLNTF 130
            ...|.|.:||:||||:                                                 
 Frog   120 NSSVHLSISSQAEMQR------------------------------------------------- 135

  Fly   131 LGQGQVKGVATGTVPSFLTYQQQAGITLSDVTGRRSRSRSSSSDDSDRERERDRQRERERGRKRR 195
                                                                             
 Frog   136 ----------------------------------------------------------------- 135

  Fly   196 SDRLDKSQERELKMVAGGGALPSPWAQPPQNQLPAVGLGLNMGLNLNLPQIPSLQSYTTSTTTTN 260
                                                                             
 Frog   136 ----------------------------------------------------------------- 135

  Fly   261 VTNNYNLEPSATSVQLLTALQQVSSGSAAPAQPSKSESEPIAFASVNPYAQMYPQLFQQQQMLLQ 325
                              ||::::|                .|:|||                  
 Frog   136 ------------------ALEEINS----------------RFSSVN------------------ 148

  Fly   326 QQQTQAKVSPTMGGSPGGGSTPQV-------VADTCYIRMSGMCQNTSYSDIRKYFQGMYIPHNG 383
                          |..|..||..       ..||.|:.:.||..||:..:|:.:|.|:.: .:.
 Frog   149 --------------SASGNGTPSYKETSYFRKPDTLYVYVHGMPLNTTKVEIKSFFVGLTV-EDA 198

  Fly   384 IKIMMVNGSRTGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQIVPVGDDEF-----------EMAE 437
            |.:...:|.|.|.|.|:|:....|.:||:|:........:.::...:.|:           |::.
 Frog   199 IFLKYPSGLRNGNAIVKFTTSGDAHEAVKRSGQQMGSTPVSLMLSDEAEWIKVGGVRARKRELSP 263

  Fly   438 ERASRQGQDGSRSHGNHNGGDRGERGGGAPVPVPRPVTNVLYIEDLPQTTTEQDIMKMF---SAS 499
            | .|...:..|..|..|   :..:....:|..     ...:::.:||...:::||...|   :..
 Frog   264 E-VSFDDRKKSVPHSRH---ELIKTRARSPYE-----ERFVHLINLPYDVSKRDIKVHFGNLAMK 319

  Fly   500 YTVVDILLSPSPKNRRESVAFVLFAREAEADSALQDTSKHYIGFRQLRVRSSSEEDM-----QNA 559
            .:.:..|...|.|..||  .||.|....:...|.....|.:.. |.:.|...||.||     :..
 Frog   320 DSQITFLCDWSGKRTRE--GFVKFTSINQYRDACAQHRKEFCS-RLVDVLPISERDMMDLIARTG 381

  Fly   560 KEKQRRANEQLLKEEADQREELLKDQQRRQKQQQQENENIQANRFAADPRRRQAEDQQQQQQMNM 624
            |:.:.|:              |.||..::..|:.                             |:
 Frog   382 KKPRERS--------------LRKDSPKKCSQES-----------------------------NL 403

  Fly   625 GP-------NFNSNMSPNMMAPFVNGGNMPFHMPPLQQNGVNNFPFNMNNNYNYNGNSNGNGPNY 682
            |.       ||.||::...:..|.:|.::                                    
 Frog   404 GKGKCIYLRNFASNVTKPDIQNFFSGFSL------------------------------------ 432

  Fly   683 PNDNGGAGVIQRPRQEDVFVRVHNCEYATRANDLGELFSLEHLRIEHIEQLFNERNQSSGEFIVE 747
                         ::||:|:...|       |.:|                       .||.:|.
 Frog   433 -------------KEEDIFLLYDN-------NGIG-----------------------LGEALVV 454

  Fly   748 FSDPASCKLAIREFHNRRFRGRGLRVVAITPQEIADRMKKPFMDYLPGGNGPRKAETNNANDGAG 812
            ||.....: :.::.|.::|:|..:.:..|..|::     |.|     |.|...:.......:.|.
 Frog   455 FSTEKEAE-STKKLHCKKFQGTEILLSCINEQQM-----KAF-----GVNTSARQSEAKIQEQAP 508

  Fly   813 GNKASAQPSRRR-------GPS------RFDKPQEQPS----------QQQDRPLSLERED---N 851
            ..||.| |:|..       |.|      ..|.|.:..|          |..|.|.:|...|   |
 Frog   509 EYKARA-PARETHLPVTEVGASVNMKCEHLDLPVKLQSSKLPVAYETLQSLDLPFTLGSTDFPKN 572

  Fly   852 SSTSSNAPVKQHFNPFARPDPPLSSSSLSPSNQGQVKPTSPVPVPTSIIP-DKFNRPGC-VVAMR 914
            ...:.||..:....|....|.|.....:   |.|.| |.|||   ..:|| :..|:.|. ||.::
 Frog   573 EDFAENALHRAVDTPSIAKDVPFIQIQV---NSGSV-PDSPV---KDVIPNNNGNQNGVGVVLVK 630

  Fly   915 NVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFESRRKKQIFNRT 979
            ::|....:.:.:.||..||:|..::.:..|      |..||.|::..||..|.:....|.:.:..
 Frog   631 HLPRTFTVSEALDFFHGYKVSSVNLAQIGN------GVARVRFQTHKEAVDAVKDLNNKPVGHHK 689

  Fly   980 VYLDII 985
            |:|.::
 Frog   690 VFLALV 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:240954 35/72 (49%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:240700 19/69 (28%)
RRM <364..551 CDD:223796 41/200 (21%)
RRM_SF 478..549 CDD:240668 16/73 (22%)
RRM_SF 702..773 CDD:240668 11/70 (16%)
RRM_hnRNPH_ESRPs_RBM12_like 910..982 CDD:240700 18/71 (25%)
rbm12b.2XP_012820298.2 RRM_SF 56..129 CDD:418427 35/72 (49%)
RRM_SF 168..253 CDD:418427 22/85 (26%)
RRM_SF 293..373 CDD:418427 19/82 (23%)
RRM_SF 407..482 CDD:418427 20/154 (13%)
RRM_SF 629..693 CDD:418427 16/69 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 186 1.000 Inparanoid score I3795
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D132643at33208
OrthoFinder 1 1.000 - - FOG0001433
OrthoInspector 1 1.000 - - otm48083
Panther 1 1.100 - - O PTHR13976
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.160

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