DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and Hnrnph1

DIOPT Version :9

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_001334416.1 Gene:Hnrnph1 / 59013 MGIID:1891925 Length:472 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:240954
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:240700
RRM <364..551 CDD:223796
RRM_SF 478..549 CDD:240668
RRM_SF 702..773 CDD:240668
RRM_hnRNPH_ESRPs_RBM12_like 910..982 CDD:240700
Hnrnph1NP_001334416.1 RRM1_hnRNPH_hnRNPH2_hnRNPF 10..88 CDD:410128
RRM2_hnRNPH_hnRNPH2_hnRNPF 103..192 CDD:410130
2 X 16 AA Gly-rich approximate repeats 234..433
zf-RNPHF 255..290 CDD:369688
RRM3_hnRNPH_hnRNPH2_hnRNPF 289..364 CDD:410133
2 X 19 AA perfect repeats 354..392
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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