DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and grsf1

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:XP_005165391.1 Gene:grsf1 / 563249 ZFINID:ZDB-GENE-060825-196 Length:403 Species:Danio rerio


Alignment Length:584 Identity:105/584 - (17%)
Similarity:167/584 - (28%) Gaps:280/584 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   413 RNNTMFRDR-LIQIVPVGDDEFEMAEERASRQGQDGSRSHGNHNGGDRGERGGGAPVPVPRPVTN 476
            :|..||..| |....|..|||:                                .|:|...|.:.
Zfish    75 KNPWMFSQRSLCSEAPSKDDEY--------------------------------PPLPEYTPGSE 107

  Fly   477 --------VLYIEDLPQTTTEQDIMKMFS-----ASYTVVDILLSPSPKNRRESVAFVLFAREAE 528
                    ::..:.||.:.|.:|||..||     .....|.||.:...|...:  ||:....|.:
Zfish   108 ENQAKELFIVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYNKYGKPSGQ--AFIELEHEED 170

  Fly   529 ADSALQDTSKHYIGFRQLRVRSSSEEDMQNAKEKQRRANEQLLKEEADQREELLKDQQRRQKQQQ 593
            ...|| |..:||:..|.:.||..:.:|                      .|.:||..:.|.    
Zfish   171 VGKAL-DQHRHYLRDRFIEVREVTNKD----------------------AEAILKASKERV---- 208

  Fly   594 QENENIQANRFAADPRRRQAEDQQQQQQMNMGPNFNSNMSPNMMAPFVNGGNMPFHMPPLQQNGV 658
                                                                             
Zfish   209 ----------------------------------------------------------------- 208

  Fly   659 NNFPFNMNNNYNYNGNSNGNGPNYPNDNGGAGVIQRPRQEDVFVRVHNCEYATRANDLGELFSLE 723
                                                  :.|..||:....|:....|:...||..
Zfish   209 --------------------------------------ETDTVVRLRGLPYSCTEGDIIRFFSGL 235

  Fly   724 HLRIEHIEQLFNERNQSSGEFIVEFSDPASCKLAIREFHNRRFRGRGLRVVAITPQEIADRMKKP 788
            .:..:.:..:.|.|.:|||:..|||:..|..:.|:::  :|...|.  |.:.|.|     .||  
Zfish   236 DVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKK--DREILGN--RYIEIFP-----AMK-- 289

  Fly   789 FMDYLPGGNGPRKAETNNANDGAGGNKASAQPSRRRGPSRFDKPQEQPSQQQDRPLSLEREDNSS 853
                                        ||.||:.|            |.|.||.          
Zfish   290 ----------------------------SAIPSQNR------------SWQNDRV---------- 304

  Fly   854 TSSNAPVKQHFNPFARPDPPLSSSSLSPSNQGQVKPTSPVPVPTSIIPDKFNRPGCVVAMRNVPF 918
                      |.|.|. ||||.:::::.:                           |:.||.:||
Zfish   305 ----------FTPRAE-DPPLRNTTVTKN---------------------------VIHMRGLPF 331

  Fly   919 KAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFESRRKKQIFNRTVYL 982
            .|:.:||::||:..:|.  .::..|..||||||:....|::..:|..|. |:.::.|..|.:.|
Zfish   332 DAKAEDIVKFFAPVRLM--KVVVEFGPEGKPTGEAEAYFKTHEDAVLAM-SKDREFIMERYIEL 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 5/12 (42%)
RRM_SF 478..549 CDD:409669 21/75 (28%)
RRM_SF 700..773 CDD:409669 18/72 (25%)
RRM5_RBM12_like 909..983 CDD:409937 25/74 (34%)
grsf1XP_005165391.1 RRM_SF 114..192 CDD:473069 23/80 (29%)
RRM2_hnRNPH_CRSF1_like 212..288 CDD:409927 21/84 (25%)
RRM_SF 324..396 CDD:473069 24/72 (33%)
Blue background indicates that the domain is not in the aligned region.

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