DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and esrp1

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:XP_005158084.1 Gene:esrp1 / 560190 ZFINID:ZDB-GENE-070112-1732 Length:718 Species:Danio rerio


Alignment Length:467 Identity:114/467 - (24%)
Similarity:170/467 - (36%) Gaps:127/467 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VIIRLQNLPWTANARDIRNFFS-GLSIPEGGVHII------GGEMGDAFIAFSTDEDARCAMLKD 60
            :|:|::.||:.|.|..:..||| ...:.:|...|:      |...||||:.||.:|.|:.|:.|.
Zfish   326 IIVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNALKKH 390

  Fly    61 REKLMEIQVRLLLSSRAEMQKVI---ETARKAASAQAPVSVPVPMPVVVPVTAAKVAG------- 115
            ::.|.:..:.|..|:.||:|:|:   .:|.....|.:|:...|..|..||.||| |.|       
Zfish   391 KDMLGKRYIELFKSTAAEVQQVLNKYSSAPLIPVAPSPILSVVAPPTFVPQTAA-VPGVRDCVRL 454

  Fly   116 PAAPLPPIIGGLNTFLGQ--GQVKGVATGTVPSFLTYQQQAGITLSDVTGRRSRSRSSSSDDSDR 178
            ...|....|..:..|||:  ..:|   |..|...|.:|           ||      .|.:...:
Zfish   455 RGLPYDASIQDILVFLGEYGADIK---THGVHMVLNHQ-----------GR------PSGEAFIQ 499

  Fly   179 ERERDR-----QRERERGRKRRSDRLDKSQERELKMVAGGGALPSPWAQPPQNQLPAVGLGLNMG 238
            .|..:|     ||..:|..|.|...:.....:|:.:|..||.|......||..:|..:       
Zfish   500 MRSAERAFLAAQRCHKRSMKERYVEVFACSAQEVNIVLMGGTLNRSGLSPPPCKLRRL------- 557

  Fly   239 LNLNLPQIPSLQSYTTSTTTTNVTNNYNLEPSATSVQLLTALQQVSSGSAAPAQPSKSESEPIAF 303
                     |..|||.              |....|  |.|...:.:|:..|.:  .:...|..|
Zfish   558 ---------SPPSYTF--------------PHGAPV--LPAGAVLPAGAVLPVE--SAGIYPSQF 595

  Fly   304 ASVNPYAQMYPQLFQQQQMLLQQQQTQAKVSPTMGGSPGG------GSTPQV-----VADTCYIR 357
            . :.|....:...|......|....|....||.  |||..      |.||..     ...|..||
Zfish   596 L-LGPRPPPHTTTFYPASNTLYMNYTTYYPSPP--GSPSNISYFPTGHTPSAGSVLSAQPTALIR 657

  Fly   358 MSGMCQNTSYSDIRKYFQGMYIPHNGIK--IMMVNGSRTG--VAYVEFSRVSSAQKAVQRNNTMF 418
            |.|...:.:|             :||:|  :.||.|.:.|  .|:|.|..:.||::         
Zfish   658 MQGHAHSHAY-------------NNGVKEILSMVQGYQPGNSDAFVTFPSMLSAKQ--------- 700

  Fly   419 RDRLIQIVPVGD 430
                    |:||
Zfish   701 --------PIGD 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932 24/78 (31%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 17/73 (23%)
RRM_SF 478..549 CDD:409669
RRM_SF 700..773 CDD:409669
RRM5_RBM12_like 909..983 CDD:409937
esrp1XP_005158084.1 DnaQ_like_exo 7..174 CDD:447876
RRM1_ESRP1 216..308 CDD:410134
RRM_SF 310..416 CDD:473069 29/89 (33%)
RRM3_ESRP1_ESRP2 449..529 CDD:410138 20/99 (20%)
Chi1 <558..>674 CDD:442692 33/149 (22%)
Blue background indicates that the domain is not in the aligned region.

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