Protein Alignment CG7879 and fus

DIOPT Version :10

• Sequence 1: NP_647626.1
• Gene: CG7879 / 38184
• FlyBaseID: FBgn0035235
• Length: 985
• Species: Drosophila melanogaster
• Sequence 2: NP_524691.1
• Gene: fus / 44095
• FlyBaseID: FBgn0023441
• Length: 967
• Species: Drosophila melanogaster
• Alignment Length: 570
• Identity: 113/570 - (19%)
• Similarity: 187/570 - (32%)
• Gaps: 199/570 - (34%)

  Fly     3 VIIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGE-------------MGDAFIAFSTDEDAR 54
            ||||::.||:.|.|:.:.:||:....|.  .|::.|.             .||||:.|:.:.||.
  Fly   380 VIIRMRGLPYDATAKQVLDFFTTGDTPP--CHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAP 442

  Fly    55 CAMLKDREKLMEIQVRLLLSSRAEMQKVIETARK-------AASAQAPVSVPVP---MPVVVPVT 109
            .|:.:.||.:.:..:.|..|:.||:|:|:..:..       ...:|.|:...:|   :|::..|.
  Fly   443 KALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQLPLLPQVG 507

  Fly   110 AAKV-----AGPA---APLPPIIGGLNT--FLGQGQVKG-VATGTVP----------------SF 147
            |..:     |.||   .|:||....|.|  .:..|..|. :....:|                ..
  Fly   508 AHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKH 572

  Fly   148 LTYQQQAGI-TLSDVTGRRSRSRSSSSDDSDRER---ERDRQRERERGRKRRSDRLDKSQERELK 208
            :.||   |: .:.:..|:.|.......|..:..|   :|........|:|.|...:.:....::.
  Fly   573 IIYQ---GVHMVINAQGQPSGEAFIQMDLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMN 634

  Fly   209 MVAGGGALPSPWAQPP---------QNQLPAVGLGL----------------------------- 235
            ||..|| |.||.||||         |..|.|...|:
  Fly   635 MVLNGG-LASPVAQPPPPHLGHAHKQQSLLAATTGMFSSAGQSPTTVAAGTAQSPLGGTHTHTHP 698

  Fly   236 -------------------NMGLNLNLPQIPSLQSYTTSTTTTN--------------------- 260
                               :.||:.:...:|.|.:..:::...:
  Fly   699 HSHAHAHATGHAHAAAAAAHHGLSASSAMLPGLSAAASASGLASFMSAGQQSAAAAAHSAASLQN 763

  Fly   261 ----------VTNNYNLEPSATSV--------------------QLLTALQQVSSGSAAPAQPSK 295
                      ..|.::|.|..::.                    |.|...||.::.:.|..|..:
  Fly   764 AAVALAPQGYALNPFSLPPPGSAAAAAASTPALLAQQQAQFIAQQSLLVRQQAAAAALAAEQQQQ 828

  Fly   296 SESEPIAFASVNPYAQMYPQLFQQQQMLLQQQQTQAKVSPTMGGSPGGGSTPQVVADTCYIRMSG 360
            .:.:...:||.  ..|.:|...||||   ||||..|......|       .||.|
  Fly   829 QQQQQQLYASA--MLQQHPLYLQQQQ---QQQQLYASAMLQQG-------QPQFV---------- 871

  Fly   361 MCQNTSYSDIRKYFQGMYIPHNGIKIMMVNGSRTGVAYVEFSRVSSAQKA 410
            :.|..|         ..|:|...:..|...|:.:||.....:.|:.|..|
  Fly   872 LMQRPS---------AAYLPPFPLSYMSAAGAASGVGVAPGAAVAGAAAA 912

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG7879	NP_647626.1	RRM1_RBM12_like	2..75	CDD:409932	24/84 (29%)
		RRM_hnRNPH_ESRPs_RBM12_like	355..425	CDD:409699	11/56 (20%)
		RRM_SF	478..549	CDD:409669
		RRM_SF	700..773	CDD:409669
		RRM5_RBM12_like	909..983	CDD:409937
fus	NP_524691.1	DnaQ_like_exo	13..194	CDD:447876
		RRM1_Fusilli	280..359	CDD:241182
		RRM2_Fusilli	363..462	CDD:410137	24/83 (29%)
		RRM3_Fusilli	545..629	CDD:241187	13/86 (15%)