DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and hnrnph1l

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_997754.2 Gene:hnrnph1l / 321556 ZFINID:ZDB-GENE-030131-275 Length:407 Species:Danio rerio


Alignment Length:494 Identity:93/494 - (18%)
Similarity:155/494 - (31%) Gaps:169/494 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IIRLQNLPWTANARDIRNFFSGLSIPEGG--VHII----GGEMGDAFIAFSTDEDARCAMLKDRE 62
            ::|::.|||:.:|.::..||||..|...|  :|..    |...|:||:...:::|.:.|:.||||
Zfish     8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAVKKDRE 72

  Fly    63 KLMEIQVRLLLSSRAEMQKVIETARKAASAQAPVSVPVPMPVVVPVTAAKVAGPAAPLPPIIGGL 127
            .:....|.:..|:..||..|:                            |..||..|...     
Zfish    73 SMGHRYVEVFKSNNVEMDWVL----------------------------KHTGPNCPETE----- 104

  Fly   128 NTFLGQGQVK------GVATGTVPSFLTYQQ--QAGITLS-DVTGRRSRS---RSSSSDDSDRER 180
                |.|.|:      |.:...:..|.:..:  ..||||. |..||.:..   :.:|.|.:::..
Zfish   105 ----GDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKAL 165

  Fly   181 ERDRQRERERGRK-RRSDRLDKSQERELKMVAGGGALPSPWAQPPQNQLPAVGLGLNMGLNLNLP 244
            ::.::|...|..: .:|.|.:.....|......|...|.|:.:|...     |.|.|        
Zfish   166 KKHKERIGHRYIEIFKSSRAEVRTHYEPPRKGMGMQRPGPYDRPSGG-----GRGYN-------- 217

  Fly   245 QIPSLQSYTTSTTTTNVTNNYNLEPSATSVQLLTALQQVSSGSAAPAQPSKSESEPIAFASVNPY 309
                                                 .:|.|.:                     
Zfish   218 -------------------------------------GMSRGGS--------------------- 224

  Fly   310 AQMYPQLFQQQQMLLQQQQTQAKVSPTMGGSPGG--------GSTPQVVADTCYIRMSGMCQNTS 366
                   |.:.:               .||..||        |...|.....| :.|.|:....:
Zfish   225 -------FDRMR---------------RGGYGGGVSDGRYGDGGNFQSTTGHC-VHMRGLPYRAT 266

  Fly   367 YSDIRKYFQGMYIPHNGIKIMM---VNGSRTGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQIV-- 426
            ..||..:|.    |.|.:::.:   .:|..||.|.|||:....|..|:.::....:.|.:::.  
Zfish   267 EPDIYNFFS----PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 327

  Fly   427 -PVGDDEFEMAEERASRQGQDGSRSHGNHNGGDRGERGG 464
             ..|........:.....|...|..||....|. |..||
Zfish   328 STAGGSNGGYGGQMMGGMGNQSSYGHGGQQMGG-GYTGG 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932 23/76 (30%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 17/72 (24%)
RRM_SF 478..549 CDD:409669
RRM_SF 700..773 CDD:409669
RRM5_RBM12_like 909..983 CDD:409937
hnrnph1lNP_997754.2 RRM1_hnRNPH_hnRNPH2_hnRNPF 6..84 CDD:410128 23/75 (31%)
RRM2_hnRNPH_hnRNPH2_hnRNPF 99..188 CDD:410130 19/97 (20%)
zf-RNPHF <237..255 CDD:429823 2/17 (12%)
RRM3_hnRNPH_hnRNPH2_hnRNPF 254..329 CDD:410133 18/79 (23%)
Blue background indicates that the domain is not in the aligned region.

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