DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and Esrp2

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:XP_038953670.1 Gene:Esrp2 / 307810 RGDID:1310855 Length:726 Species:Rattus norvegicus


Alignment Length:940 Identity:190/940 - (20%)
Similarity:305/940 - (32%) Gaps:316/940 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 PVPMPVVVPVTAAKVAGPAAPLPPIIGGLNT--FLGQGQV---KGVATGTVPSFLTYQQQAGITL 158
            |.|.|..:.|.....||   .|.|.:|...|  .|...||   :....||:...|...:.|.:: 
  Rat    23 PCPEPQSLVVLFGATAG---ALGPDLGSDETDLILLVWQVVEPRSRQVGTLHKSLVRAEAAALS- 83

  Fly   159 SDVTGRRSRSRSSSSDDSDRERERDRQRERERGRKRRSDRLDKSQERELKMVAGGGAL----PSP 219
                 .:.|..|..|.||                ..|::.|||..::..::|:|..||    |..
  Rat    84 -----PQCREASGLSADS----------------LARAESLDKVLQQFSQLVSGDVALLGGGPYV 127

  Fly   220 WAQPPQNQLPAVGLGLNMGLNLNLP---------------QIPSLQSYTTSTTTTNVTNNYNLEP 269
            .....|..|..|........||.||               |.||..|....|..| :..:..||.
  Rat   128 LCTDGQQLLRQVLHPEASRKNLVLPDTFFSFYDLRREFHVQHPSTCSARDLTVGT-MAQDLGLET 191

  Fly   270 SATS-----------VQLLTALQQVSSGSAAPAQPSKSESEPIAFASVNPYAQMYPQLFQQQQML 323
            .||.           |.::..|.:..:|                            .||.:.:::
  Rat   192 DATEDDFGVWEVKTMVAVILHLLEGPNG----------------------------HLFSKPEVV 228

  Fly   324 LQQQQTQAKVSPTMGGSP-GGGSTPQVVADTCYIRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIM 387
            .|:.:|    .|.....| ...|...||.:...:|..|:...:|..|:.::|:|:.|...|:.:.
  Rat   229 KQKYET----GPCSDPVPCPHSSKADVVDNETVVRARGLPWQSSDQDVARFFKGLNIARGGVALC 289

  Fly   388 M-VNGSRTGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQIVPVGDDEFEMAEERASRQGQDGSRSH 451
            : ..|.|.|.|.:.|........|:||:......|.|::.....:||.                 
  Rat   290 LNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFV----------------- 337

  Fly   452 GNHNGGDRGERGGGAPVPVPRPVTN----VLYIEDLPQTTTEQDIMKMFSASYTV---VD-ILLS 508
                     :..||..:.|.|.::.    :|.:..||.:....|::........|   || :|..
  Rat   338 ---------KIAGGTSLEVARFLSREDQVILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFV 393

  Fly   509 PSPKNRRESVAFVLFAREAEADSALQDTSKHYIGFRQLRVRSSSEEDMQNAKEKQRRANEQLLKE 573
            ..|..|....||.|||.|..|.:||: ..|..:|.|.:.:..|:..::|           |:|  
  Rat   394 RHPDGRPTGDAFALFACEELAQAALR-RHKGMLGKRYIELFRSTAAEVQ-----------QVL-- 444

  Fly   574 EADQREELLKDQQRRQKQQQQENENIQANRFAADPRRRQAEDQQQQQQMNMGPNFNSNMSPNMMA 638
                                        ||:||.|                       :.|.:.|
  Rat   445 ----------------------------NRYAASP-----------------------LLPTLTA 458

  Fly   639 PFVNGGNMPFHMPPLQQNGVNNFPFNMNNNYNYNGNSNGNGPNYPNDNGGAGVIQRPRQEDVFVR 703
            |.:   .:||   ||.                                ||.|       .|. ||
  Rat   459 PLL---PIPF---PLA--------------------------------GGTG-------RDC-VR 477

  Fly   704 VHNCEYATRAND----LGELFSLEHLRIEHIEQLFNERNQSSGEFIVEFSDPASCKLAIREFHNR 764
            :....|.....|    |||  :...:|...:..:.|::.:.||:..::.........|.:..|.:
  Rat   478 LRGLPYTATIEDILSFLGE--AAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERALAAAQRCHKK 540

  Fly   765 RFRGRGLRVVAITPQEIADRMKKPFMDYLPGGNGPRKAETNNANDGAGGNKASAQPSRRRGPSRF 829
            ..:.|.:.||..:.:|::        ..|.||:..|..             .|..|.:       
  Rat   541 VMKERYVEVVPCSTEEMS--------RVLMGGSLSRSG-------------LSPPPCK------- 577

  Fly   830 DKPQEQP---SQQQDRPLSLEREDNSSTSSNA------------PVKQHFNPFAR---------P 870
             .|...|   :..|..|..:..|..:...|:|            |:..:..|..:         |
  Rat   578 -LPCLSPPTYATFQASPALIPTETTALYPSSALLPAARVPAAATPLAYYPGPATQLYMNYTAYYP 641

  Fly   871 DPPLSSSSLSPSNQGQV--KPTSPVPVPTSIIPDKFNRPGCVVAMRNVPFKAELKDIMRFFSDYK 933
            .||     :||:..|.:  .||:....|||::    ::||.:|.|:.||:.|.:||::..|..|:
  Rat   642 SPP-----VSPTTVGYLTTPPTALASTPTSML----SQPGALVRMQGVPYTAGMKDLLSVFQAYQ 697

  Fly   934 LSPDDIIRRFNDEGKPTGD-TRVAFESPSE 962
            |:|||.....     |.|| .|...::|.|
  Rat   698 LAPDDYATLV-----PVGDPPRTVLQAPKE 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 18/70 (26%)
RRM_SF 478..549 CDD:409669 22/74 (30%)
RRM_SF 700..773 CDD:409669 14/76 (18%)
RRM5_RBM12_like 909..983 CDD:409937 19/55 (35%)
Esrp2XP_038953670.1 DnaQ_like_exo <82..214 CDD:447876 32/154 (21%)
RRM_SF 247..339 CDD:473069 23/117 (20%)
RRM_SF 341..447 CDD:473069 31/147 (21%)
RRM3_ESRP1_ESRP2 473..553 CDD:410138 17/82 (21%)
PHA03247 <564..687 CDD:223021 31/152 (20%)
RRM_SF 673..>702 CDD:473069 11/28 (39%)
Blue background indicates that the domain is not in the aligned region.

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