DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and GRSF1

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_002083.4 Gene:GRSF1 / 2926 HGNCID:4610 Length:480 Species:Homo sapiens


Alignment Length:491 Identity:95/491 - (19%)
Similarity:172/491 - (35%) Gaps:109/491 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 ALQQVSSGSAAPAQPSKSESEP-IAFASVNPYAQMYPQLFQQQQMLLQQQQTQAKVSPTMGGSPG 342
            |..|.......|..|.:....| :|.::....|..|..|   :..||.|....|...||...|..
Human    59 AASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYSAL---RASLLPQSLAAAAAVPTRSYSQE 120

  Fly   343 GGST------------------PQVVADTCYIRMSGMCQNTSYSDIRKYFQGMYIPH--NGIKIM 387
            ..:|                  .:.|.|...||..|:..:.:..|:..:|....|.:  |||..:
Human   121 SKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFL 185

  Fly   388 M-VNGSRTGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQIVPVGDDEFEMAEERASRQGQDGSRSH 451
            : .:|.|.|.|.:|.......|||::::......|.:::..:.:::.:...:....:..      
Human   186 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSS------ 244

  Fly   452 GNHNGGDRGERGGGAPVPVPRPVTN--VLYIEDLPQTTTEQDIMKMFSASYTVVDILLSPSPKNR 514
                                 ||.|  |:.:..||.:..|:||:..| |...:|||......:.|
Human   245 ---------------------PVVNDGVVRLRGLPYSCNEKDIVDFF-AGLNIVDITFVMDYRGR 287

  Fly   515 RES-VAFVLFAREAEADSALQDTSKH--YIGFRQLRVRSSSEEDMQN--AKEKQRRANEQLLKEE 574
            |:: .|:|.|.....|:.||   .||  .||.|.:.:..|...:::.  ...|.::.......:.
Human   288 RKTGEAYVQFEEPEMANQAL---LKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKY 349

  Fly   575 ADQREELLKDQQRRQKQQQQENENIQANRFAADPRRRQAE-DQQQQQQMNMGPNFNSNMSPNMMA 638
            ..:.|.:.        ::.:.||:||.  ..|....::.| .::..:::....:|.:..|.:   
Human   350 ITEPEMVF--------EEHEVNEDIQP--MTAFESEKEIELPKEVPEKLPEAADFGTTSSLH--- 401

  Fly   639 PFVNGGNMPFHMPPLQQNGVNNF----PFNMNNNYNYNGNSNGNGPNYPNDNGGAGVIQRPRQED 699
             ||:...:||...  .|:.:|.|    |..:...|:.:|.:.|                   :.|
Human   402 -FVHMRGLPFQAN--AQDIINFFAPLKPVRITMEYSSSGKATG-------------------EAD 444

  Fly   700 VFVRVHNCEYATRANDLGELFSLEHLRIEHIEQLFN 735
            |....|....|....|      ..|:...:||...|
Human   445 VHFETHEDAVAAMLKD------RSHVHHRYIELFLN 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 18/72 (25%)
RRM_SF 478..549 CDD:409669 23/73 (32%)
RRM_SF 700..773 CDD:409669 8/36 (22%)
RRM5_RBM12_like 909..983 CDD:409937
GRSF1NP_002083.4 RRM1_GRSF1 149..227 CDD:410129 18/77 (23%)
RRM2_GRSF1 249..325 CDD:409928 24/79 (30%)
RRM3_GRSF1 401..475 CDD:410132 20/105 (19%)
Blue background indicates that the domain is not in the aligned region.

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