DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7879 and GRSF1

DIOPT Version :9

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_002083.4 Gene:GRSF1 / 2926 HGNCID:4610 Length:480 Species:Homo sapiens


Alignment Length:491 Identity:95/491 - (19%)
Similarity:172/491 - (35%) Gaps:109/491 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 ALQQVSSGSAAPAQPSKSESEP-IAFASVNPYAQMYPQLFQQQQMLLQQQQTQAKVSPTMGGSPG 342
            |..|.......|..|.:....| :|.::....|..|..|   :..||.|....|...||...|..
Human    59 AASQTRGLQTGPVPPGRLAGPPAVATSAAAAAAASYSAL---RASLLPQSLAAAAAVPTRSYSQE 120

  Fly   343 GGST------------------PQVVADTCYIRMSGMCQNTSYSDIRKYFQGMYIPH--NGIKIM 387
            ..:|                  .:.|.|...||..|:..:.:..|:..:|....|.:  |||..:
Human   121 SKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFL 185

  Fly   388 M-VNGSRTGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQIVPVGDDEFEMAEERASRQGQDGSRSH 451
            : .:|.|.|.|.:|.......|||::::......|.:::..:.:::.:...:....:..      
Human   186 LNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSS------ 244

  Fly   452 GNHNGGDRGERGGGAPVPVPRPVTN--VLYIEDLPQTTTEQDIMKMFSASYTVVDILLSPSPKNR 514
                                 ||.|  |:.:..||.:..|:||:..| |...:|||......:.|
Human   245 ---------------------PVVNDGVVRLRGLPYSCNEKDIVDFF-AGLNIVDITFVMDYRGR 287

  Fly   515 RES-VAFVLFAREAEADSALQDTSKH--YIGFRQLRVRSSSEEDMQN--AKEKQRRANEQLLKEE 574
            |:: .|:|.|.....|:.||   .||  .||.|.:.:..|...:::.  ...|.::.......:.
Human   288 RKTGEAYVQFEEPEMANQAL---LKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKY 349

  Fly   575 ADQREELLKDQQRRQKQQQQENENIQANRFAADPRRRQAE-DQQQQQQMNMGPNFNSNMSPNMMA 638
            ..:.|.:.        ::.:.||:||.  ..|....::.| .::..:::....:|.:..|.:   
Human   350 ITEPEMVF--------EEHEVNEDIQP--MTAFESEKEIELPKEVPEKLPEAADFGTTSSLH--- 401

  Fly   639 PFVNGGNMPFHMPPLQQNGVNNF----PFNMNNNYNYNGNSNGNGPNYPNDNGGAGVIQRPRQED 699
             ||:...:||...  .|:.:|.|    |..:...|:.:|.:.|                   :.|
Human   402 -FVHMRGLPFQAN--AQDIINFFAPLKPVRITMEYSSSGKATG-------------------EAD 444

  Fly   700 VFVRVHNCEYATRANDLGELFSLEHLRIEHIEQLFN 735
            |....|....|....|      ..|:...:||...|
Human   445 VHFETHEDAVAAMLKD------RSHVHHRYIELFLN 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:240954
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:240700 18/72 (25%)
RRM <364..551 CDD:223796 42/194 (22%)
RRM_SF 478..549 CDD:240668 23/73 (32%)
RRM_SF 702..773 CDD:240668 7/34 (21%)
RRM_hnRNPH_ESRPs_RBM12_like 910..982 CDD:240700
GRSF1NP_002083.4 RRM1_GRSF1 149..227 CDD:241174 18/77 (23%)
RRM2_GRSF1 249..322 CDD:240949 24/76 (32%)
RRM 307..>459 CDD:223796 32/189 (17%)
RRM3_GRSF1 401..475 CDD:241177 20/105 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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