DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and Esrp1

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_918944.2 Gene:Esrp1 / 207920 MGIID:1917326 Length:681 Species:Mus musculus


Alignment Length:637 Identity:125/637 - (19%)
Similarity:217/637 - (34%) Gaps:207/637 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 GGGSTPQVVADTCYIRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIMM-VNGSRTGVAYVEFSRVS 405
            |..|..:::.|:..:|..|:...:|..||.::|:|:.|...|..:.: ..|.|.|.|.|.|....
Mouse   213 GTCSKMELIDDSTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEE 277

  Fly   406 SAQKAVQRNNTMFRDRLIQIV-PVGDDEFEMAEERASRQGQDGSRSHGNHNGGDRGERGGGAPVP 469
            ....|:||:......|.|::. ..|:|..::|...::...|..|:.:                  
Mouse   278 HRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLSKEN------------------ 324

  Fly   470 VPRPVTNVLYIEDLPQTTTEQDIMKMFSASYTVV----DILLSPSPKNRRESVAFVLFAREAEAD 530
                 ..::.:..||.|.|.::::..|.....:.    .||....|..|....||||||.|..|.
Mouse   325 -----QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQ 384

  Fly   531 SALQDTSKHYIGFRQLRVRSSSEEDMQNAKEKQRRANEQLLKEEADQREELLKDQQRRQKQQQQE 595
            :||: ..|..:|.|.:.:..|:..::|           |:|                        
Mouse   385 NALR-KHKELLGKRYIELFRSTAAEVQ-----------QVL------------------------ 413

  Fly   596 NENIQANRFAADPRRRQAEDQQQQQQMNMGPNFNSNMSPNMMAPFVNGGNMPFHMPPLQQNGVNN 660
                  |||::.|                       :.|....|.:         |.|.|..|. 
Mouse   414 ------NRFSSAP-----------------------LIPLPTPPII---------PVLPQQFVP- 439

  Fly   661 FPFNMNNNYNYNGNSNGNGPNYPNDNGGAGVIQRPRQEDVFVRVHNCEYATRAND----LGELFS 721
             |.|:.:                                 .:|:....||....|    ||| ||
Mouse   440 -PTNVRD---------------------------------CIRLRGLPYAATIEDILDFLGE-FS 469

  Fly   722 LEHLRIEHIEQLFNERNQSSGEFIVEFSDPASCKLAIREFHNRRFRGRGLRVVAITPQEIADRMK 786
            .: :|...:..:.|.:.:.||:..::........:|.:::|.:..:.|.:.|...:.:|      
Mouse   470 TD-IRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEE------ 527

  Fly   787 KPFMDY-LPGGNGPRKAETNNANDGAGGNKASAQPSRR--RGPSRFDKPQE-----------QPS 837
               |:: |.||...|             |..|..|.:.  ..|..:..|..           |||
Mouse   528 ---MNFVLMGGTLNR-------------NGLSPPPCKLPCLSPPSYTFPAPTAVIPTEAAIYQPS 576

  Fly   838 QQQDRPLSLEREDNSSTSSNAPVKQHFNPFAR--PDPPLSSSSL----SPSNQGQVKPTSPVPVP 896
            ...: |.:|:    .||:......|.|..:..  |.||.|.:||    :.:|...|.|       
Mouse   577 LLLN-PRALQ----PSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLSSVPP------- 629

  Fly   897 TSIIPDKFNRPGCVVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGK 948
                     :||.||.|:.:.:...:|:|:.||..|:.:.:|.:...||:.:
Mouse   630 ---------QPGTVVRMQGLAYNTGVKEILNFFQGYQYATEDGLVHTNDQAR 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 20/70 (29%)
RRM_SF 478..549 CDD:409669 22/74 (30%)
RRM_SF 700..773 CDD:409669 16/76 (21%)
RRM5_RBM12_like 909..983 CDD:409937 11/40 (28%)
Esrp1NP_918944.2 DnaQ_like_exo 29..>145 CDD:447876
RRM_SF 216..308 CDD:473069 24/91 (26%)
RRM2_ESRP1 310..419 CDD:410136 31/173 (18%)
RRM3_ESRP1_ESRP2 444..524 CDD:410138 17/114 (15%)
RRM_SF 633..>672 CDD:473069 11/38 (29%)
Blue background indicates that the domain is not in the aligned region.

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