DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and hrpf-2

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_741422.1 Gene:hrpf-2 / 177398 WormBaseID:WBGene00022253 Length:610 Species:Caenorhabditis elegans


Alignment Length:592 Identity:123/592 - (20%)
Similarity:193/592 - (32%) Gaps:178/592 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   327 QQTQAKVSPTMGGSPGGGSTPQVVADTCYIRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIMMVNG 391
            |.|..:...:|......|..|:    :.|||:.|:..|.:..||.::|.|:.|..  :|.:...|
 Worm    41 QSTIKEADESMPTKISSGEPPR----SQYIRLRGLPFNATEKDIHEFFAGLTIER--VKFVCTTG 99

  Fly   392 SRTGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQIVPVGDDEFEMAEERASRQGQDGSRSHGNHNG 456
            ...|.|||||.....|.||::.:.....:|.|::..|..||.|..           .|...:.||
 Worm   100 RPNGEAYVEFKNTEEAGKAMENDRKEISNRYIEVFTVEADEAEFE-----------FRPDPDSNG 153

  Fly   457 GDRGERGGGAPVPVPRPVTNVLYIEDLPQTTTEQDIMKMFSASYTVVDILLSP-----------S 510
                            .|.:|:.:..:|.:..|.|:.|.|..        |.|           .
 Worm   154 ----------------EVNHVIRLRGVPWSCKEDDVRKFFEG--------LEPPPAEIVIGGTGG 194

  Fly   511 PKNRRESVAFVLFAREAEADSALQDTSKHYIGFRQLRVRSSSEEDMQNAK---------EKQRRA 566
            |::|....|||.|..:..|:.|:...::| :|.|.:.|..||..:...||         ..:|..
 Worm   195 PRSRPSGEAFVRFTTQDAAEKAMDYNNRH-MGSRYVEVFMSSMVEFNRAKGGGSGEYSASYERTG 258

  Fly   567 NEQLLKEEADQREELLKDQQRRQKQQQQENENIQANRFAADPRRRQAEDQQQQQQMNMGPNFNSN 631
            ...|:..::..      |..||.          ...|:......|..:|                
 Worm   259 IRPLMSVDSGY------DHGRRG----------GGGRYGDSSYDRGYDD---------------- 291

  Fly   632 MSPNMMAPFVNGGNMPFHMPPLQQNGVNNFPFNMNNNYNYNGNSNGNGPNYPNDNGGAGVIQRPR 696
                                      .|...:....:|.|||.         :|.||.....|..
 Worm   292 --------------------------YNRGSYGGRRDYGYNGG---------HDQGGRSDYGRGG 321

  Fly   697 QEDVFVRVHNCEYATRANDLGELFSLEHLRIEHIEQLFNERNQSSGEFIVEFSDPASCKLAIREF 761
            .:.:.|.:....|....:.:...||  .||...::...||..:.||:.|.||.:....::|:.. 
 Worm   322 DDPLRVYMRGLPYDADDHAIAAFFS--PLRCHSVKIGINETGRPSGDAIAEFDNYNDLQVALSR- 383

  Fly   762 HNRRFRGRGLRVVAITPQEIADRMKKPFMDYLPGGNGPRK----AETNNANDGA---------GG 813
            :|:|.   |.|.|     |:.|..         |..||.:    .||:..|..|         ||
 Worm   384 NNQRM---GRRYV-----ELFDNR---------GAPGPMRRLLWKETSGTNASAAPAPDPILNGG 431

  Fly   814 NKASAQPSR----RRGPSRFDKPQEQPSQQQDRPLSLEREDNSSTSSNAPVKQHFNPFARPDPPL 874
            .:....|.|    |.||...     .||.::.|.....||..     ...::..:.|  |..||.
 Worm   432 RRGGGPPQRDSGYRAGPQAM-----PPSYRESRDPYGPREPR-----GYDIEPKYEP--RGIPPR 484

  Fly   875 SSSSLSP 881
            |:...:|
 Worm   485 SAPIRAP 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 23/69 (33%)
RRM_SF 478..549 CDD:409669 18/81 (22%)
RRM_SF 700..773 CDD:409669 17/72 (24%)
RRM5_RBM12_like 909..983 CDD:409937
hrpf-2NP_741422.1 RRM_hnRNPH_ESRPs_RBM12_like 65..134 CDD:409699 23/70 (33%)
RRM_hnRNPH_ESRPs_RBM12_like 158..232 CDD:409699 19/82 (23%)
RRM_SF 326..398 CDD:473069 20/82 (24%)
Blue background indicates that the domain is not in the aligned region.

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