DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and sym-2

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_495960.2 Gene:sym-2 / 174461 WormBaseID:WBGene00006367 Length:618 Species:Caenorhabditis elegans


Alignment Length:368 Identity:80/368 - (21%)
Similarity:145/368 - (39%) Gaps:73/368 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SVIIRLQNLPWTANARDIRNFFSGLSIPEGGVHII---GGEMGDAFIAFSTDEDARCAMLKDREK 63
            ::|:|::.||:......||.||..|.:.:..:.|.   |...||||:.|.|:|||:..:||.|:.
 Worm   280 AIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQV 344

  Fly    64 LMEIQVRLLLSSRAEMQKVIETARKAASAQAPVSVPVPMPVVVPVTAAKVAGPAAPLPPIIGGLN 128
            :.:..:.|..|:.||:|:|::......|:.| |:..|..|........::.|  .|....:..:.
 Worm   345 IGQRYIELFKSTAAEVQQVVKRCNLINSSPA-VANAVEAPEEKKKDCVRLRG--LPYEATVQHIV 406

  Fly   129 TFLGQGQVKGVATGTVPSF----LTYQQQ---AGITLSDVTGRRSRSRSSSSDDSDRERERDRQR 186
            ||||.       ..|:..|    :.|..|   :|.....:...::.|..::...::         
 Worm   407 TFLGD-------FATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASACAAGVHNN--------- 455

  Fly   187 ERERGRKRRSDRLDKSQERELKM--VAGG-------------GALPSPWAQPPQ----------- 225
            ....|:|:|...:.::...||.:  :.|.             |.||....||.|           
 Worm   456 FMSVGKKKRYIEVFQASAEELNLHHLVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPIS 520

  Fly   226 -------NQLPAVGLGLNMGLNLNLPQIPSLQSYTTSTTTTNVTNNYNLEPSATSVQLLTALQQV 283
                   .||...|:.:::|       :|.|  ....||..:..:|.......|.:....|:..:
 Worm   521 PIVPGQVTQLIIYGIHMSIG-------VPEL--VANFTTPEHTVDNVLFTRWPTHLCPGEAILTL 576

  Fly   284 SSGSAAPAQPSK-SESEPIAFASVNPYAQMYPQLFQQQQMLLQ 325
            .:..|.|.|.|. |:...::..:...|:. :||.|..|.:|::
 Worm   577 RNRGAPPPQTSPLSQISQLSAPNFAAYSH-HPQNFPLQPILME 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932 24/75 (32%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699
RRM_SF 478..549 CDD:409669
RRM_SF 700..773 CDD:409669
RRM5_RBM12_like 909..983 CDD:409937
sym-2NP_495960.2 RRM1_ESRPs_Fusilli 182..256 CDD:240951
RRM2_ESRPs_Fusilli 280..355 CDD:409930 24/74 (32%)
RRM3_Fusilli 388..472 CDD:241187 15/101 (15%)
Blue background indicates that the domain is not in the aligned region.

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