DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7879 and rbm-12

DIOPT Version :9

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_492671.1 Gene:rbm-12 / 172878 WormBaseID:WBGene00013703 Length:948 Species:Caenorhabditis elegans


Alignment Length:1181 Identity:247/1181 - (20%)
Similarity:358/1181 - (30%) Gaps:429/1181 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSVIIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGEMGDAFIAFSTDEDARCAMLKDREKLM 65
            |||||||:|||.||.|.|:|.||:||.||:|.||||||:.|:.|:.||:|:|||.||.|||..:.
 Worm     1 MSVIIRLKNLPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVGFSSDDDARLAMTKDRLMIH 65

  Fly    66 EIQVRLLLSSRAEMQKVIETARKAASAQAPVSVPVPMPVVVPVT----------------AAKVA 114
            ..:|||.|||::|...|| .|||..:..:||......||....|                ||| |
 Worm    66 GAEVRLFLSSKSEQNSVI-AARKNNTYTSPVYKEYVPPVPSQPTPAQEQNWNSQTAGNPYAAK-A 128

  Fly   115 GPAAPLPP--------IIGGLNTFLGQGQVKGVATGTVPSFLTYQQQAGITLSDVTG-------- 163
            |..|..||        .....|::..:.::.           ...|:..:.|.|..|        
 Worm   129 GYEASYPPQNSNATRTSFNNQNSYSNRQEIS-----------QNHQENSVKLKDPFGGDYGGYKF 182

  Fly   164 --------RRSRSRSSSSDDSDRERERDR---------------QRERERGRKRRSDRLDKSQER 205
                    .|..|....|..:|....|..               ..|::.|.|..::....|:|.
 Worm   183 QQQPPPQINRYGSGPPPSKPADLSNTRSLPPVNNPPPPHPIPQFPPEKQFGNKLGNNNDVSSREN 247

  Fly   206 EL-----KMVAGGGALPSPWA-----QPPQN-------------------QLPAVGLGLNMGLNL 241
            .:     :.|.||.:    |.     |||:|                   :.|......|.|...
 Worm   248 HIQGSGNERVQGGDS----WRDTSFNQPPRNDFKGNYNNAYSSNKYKNNYKAPEFNNDFNGGNKF 308

  Fly   242 NLPQIPSLQSYTTSTTTTNVTNNYNLEPSATSVQLLTALQQVSSGSAAPAQ--PSKSESEPIAFA 304
            |  |.|     ..:..:|:::.|....|......|:...|.....:.||..  ||...:.|....
 Worm   309 N--QFP-----PRNAQSTDLSENRAAPPQTGRKTLMPTPQAPFQNAPAPFTNGPSDDVNRPFQTG 366

  Fly   305 SVNPYAQMYPQLFQ--------QQQMLLQQQQTQAKVSPTMGGSPG--GGSTPQVVADTCYIRMS 359
            ......:..|..||        |..|........|.|.|.....||  ||:.|...|......:.
 Worm   367 PPGNLGRNGPPPFQAGVPPPVIQNNMGRPIAPPAAMVRPPPQNFPGGAGGALPVFQAPVMTPIVP 431

  Fly   360 GMCQNTSYSDIRKYFQGMYIPHNGIKIMMVNGSRTGVAYVEFSRVS------------------- 405
            .:.:....:.:.|:                        |:|.:|:.                   
 Worm   432 PVNKPMGAAAVEKF------------------------YIELTRLPTDLLRPAALEAFIHPTAPL 472

  Fly   406 --SAQKAVQRNNTMFRDRLIQIVPVGDDEFEMAEERASRQGQDGSR-SHGNHNGGDRGERGGGAP 467
              |:.|.|.....:....:|::..:.|....|     .|.|:.|.: ...:....|....|    
 Worm   473 TLSSVKTVFGPGGIHMHTIIRLDSIADYATMM-----RRNGEQGIKIQQSDKKSFDTAIDG---- 528

  Fly   468 VPVPRPVTNVLYIEDLPQTTTEQDIMKMFSASYTVVDILLSP-----------------SPKNRR 515
            :|:|    :|..:....|.:.|.|..|...:.:.....:.||                 .|:.||
 Worm   529 IPIP----SVSMVPSKEQRSHEDDDKKSRRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRR 589

  Fly   516 ESVAFVLFAREAEADSALQDTSKHYIGFRQLRVRSSSEEDMQNAKEKQRRA-------------- 566
            .|       |.........|.::..:....:..|...||.::...||.|.|              
 Worm   590 RS-------RSPRRREEHTDPTRWCVQVTNVPFRMKDEELLEWFSEKVRPAKLTRTFYSDGNASD 647

  Fly   567 -------NEQLLKEEADQR------------------EELLK--DQQRRQKQQQQENENIQANRF 604
                   :|.|:|.....|                  :|:||  |.....|:|..|...:|    
 Worm   648 RWVAEFSSESLMKRSFGIRTLCTGRTLRLRYIDNAKADEILKIEDVYGEGKRQMNEEARLQ---- 708

  Fly   605 AADPRRRQAEDQQQQQQMNMGPNFNSNMSPNMMAPFVNGGNMPFHMPPLQQNGVNNFPFNMNNNY 669
                       .:..::.|....||        ||....|:.|  ||||  ||....|       
 Worm   709 -----------HEVAEKANPPSFFN--------APAATRGSGP--MPPL--NGTAPLP------- 743

  Fly   670 NYNGNSNGNGPNYPNDNGGAGVIQR----PRQEDVFVRVHNCEYATRANDLGELFSLEHLRIEHI 730
                :...||.|.|..||..|...|    ||.                   |..||         
 Worm   744 ----SGQQNGMNVPPPNGFNGAPMRGGFVPRG-------------------GNNFS--------- 776

  Fly   731 EQLFNERNQSSGEFIVEFSDPASCKLAIREFHNRRFRGRGLRVVAITPQEIADRMKKPFMDYLPG 795
                    ||.|..:                      |||.......||.........|      
 Worm   777 --------QSRGGMM----------------------GRGGHGGGGGPQNFYQNGPNNF------ 805

  Fly   796 GNGPRKAE----TNNANDGA------------GGNKASAQPSRRRGPSRFDKPQEQPSQQQDRPL 844
            .|||.:.:    .|..|||.            ||.:...|     |.||.|  ..||||.:...|
 Worm   806 NNGPPEQQGQFRGNQGNDGGFRGGFRGGYRGRGGGRGGFQ-----GGSRGD--DSQPSQSELMEL 863

  Fly   845 SLEREDNSSTSSNAPVKQHFNPFARPDPPLSSSSLSPSNQGQVKPTSPVPVPTSIIPDKFNRPGC 909
                                                      :|...|              .|.
 Worm   864 ------------------------------------------IKSIGP--------------RGT 872

  Fly   910 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFESRRKKQ 974
            |::....|....|:|::.||:||:...:.|..|..|:|..||:..:|.::...||.|......::
 Worm   873 VLSCNGFPKDVTLEDVVEFFNDYEPDRNSIRIRRGDDGVMTGECMLACQNQENARRASMDLDGQK 937

  Fly   975 IFNRTVYLDII 985
            :.|..:.:.||
 Worm   938 LRNSVISVRII 948

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:240954 44/72 (61%)
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:240700 8/90 (9%)
RRM <364..551 CDD:223796 31/225 (14%)
RRM_SF 478..549 CDD:240668 12/87 (14%)
RRM_SF 702..773 CDD:240668 9/70 (13%)
RRM_hnRNPH_ESRPs_RBM12_like 910..982 CDD:240700 19/71 (27%)
rbm-12NP_492671.1 RRM1_RBM12_like 2..75 CDD:240954 44/72 (61%)
RRM_hnRNPH_ESRPs_RBM12_like 873..946 CDD:240700 19/72 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4307
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001433
OrthoInspector 1 1.000 - - oto20402
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13976
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R11245
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.030

Return to query results.
Submit another query.