DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7879 and hrpf-1

DIOPT Version :10

Sequence 1:NP_647626.1 Gene:CG7879 / 38184 FlyBaseID:FBgn0035235 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_740877.1 Gene:hrpf-1 / 172395 WormBaseID:WBGene00020936 Length:549 Species:Caenorhabditis elegans


Alignment Length:699 Identity:137/699 - (19%)
Similarity:224/699 - (32%) Gaps:224/699 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   353 TCY-IRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIMMV---NGSRTGVAYVEFSRVSSAQKAVQR 413
            |.| ::..|:....:..::|.:|     .:|||:.:.:   ||..:|.|.|.|:.......|:::
 Worm     3 TAYEVQCRGLPWEATEQELRDFF-----GNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKK 62

  Fly   414 NNTMFRDRLIQIVPVGDDEFEMAEERASRQGQDGSRSHGNHNGGDRGE----RGGGAPVPVPRP- 473
            :......|.|::.|.|.        ..:|:|..|.|       ||||:    |..|||   ||. 
 Worm    63 DREHLGSRYIEVFPAGG--------APTRRGDRGER-------GDRGDRDHYRSRGAP---PRDR 109

  Fly   474 -----------VTNVLYIEDLPQTTTEQDIMKMFSASYTVVD-ILLSPSPKNRRESVAFVLFARE 526
                       ..:::.:..||.:.|.:||....:....|.| |||....:.|....|:|.|...
 Worm   110 YSDRGGPRSSGPDSIVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETM 174

  Fly   527 AEADSALQDTSKHYIGFRQLRVRSSSEEDMQNAKEKQRRANEQLLKEEADQREELLKDQQRRQKQ 591
            .....|.|...|: ||.|.:.|..::..|:..            ..||.|.|.............
 Worm   175 ESVQIAKQRHMKN-IGHRYIEVFEATHRDLSR------------FAEENDLRVPRFGPPPFASAP 226

  Fly   592 QQQENENIQANRFAADP-------------RRRQAEDQQQQQQMNMGPNFNSNMSPNMMAPFVNG 643
            |       .|.|.|.||             .||.||.:..         :..:.:|::....|..
 Worm   227 Q-------TAPRGAYDPYSQPTDPYRNATDYRRAAEPEDP---------YARSRAPSVQDYGVRA 275

  Fly   644 GNMPFHMP-------PLQQNGVNNFPFNMNNNYNYNGNSNGNGPNYPNDNGGAGVIQRPRQEDVF 701
            ...|:..|       |.||.....:..|......|.......||: |.|      ::.||.    
 Worm   276 SYDPYTQPAAPVSSYPSQQQPSAGYYDNYAPKTAYESYGRERGPD-PRD------VRDPRD---- 329

  Fly   702 VRVHNCEYATRANDLGELFSLEHLRIEHIEQLFNERNQSSGEFIVEFSDPASCKLAIRE--FHNR 764
                     :|..|..:..:|                          |||.:.:....|  :.:|
 Worm   330 ---------SRMPDPRDSRAL--------------------------SDPYAAESRYSEYGYESR 359

  Fly   765 RFRGRG------------------LRVVAITPQEIADRMKKPFMDYLPGGNGPRKAETNNANDGA 811
            ....||                  |......|..:.:    .:.:...|..||....::....|:
 Worm   360 EPYWRGGSGGPPSIGGGVGGGGAPLAPTGRDPYSVGE----SWANGAGGPGGPPPVSSDRDRYGS 420

  Fly   812 GGNKASAQPSRRRG----PSRFDKPQEQPSQQQDRPLSLEREDNSSTSSNAPVKQHFNPFARPDP 872
            ||..:.....|..|    .|.:.:|.::.|:.:....|.:|:      ..||..|||        
 Worm   421 GGYASEPYAQREAGGAMRRSEYGRPDDRYSKPEPYGYSRDRD------YGAPQNQHF-------- 471

  Fly   873 PLSSSSLSPSNQGQVKPTSPVPVPTSIIPDKFNRPGCVVAMRNVPFKAELKDIMRFFSDYKLSPD 937
                                                 |:.||.|||:|...|:..||  :.:.|:
 Worm   472 -------------------------------------VLRMRGVPFRASEADVYDFF--HPIRPN 497

  Fly   938 DI-IRRFNDEGKPTGDTRVAFESPSEARSAFESRRKKQIFNRTVYLDII 985
            .: :.|.:...:|:||.||.|.:..:...|.  .:.||..... |:::|
 Worm   498 QVELLRDHQFQRPSGDARVIFYNRKDYDDAL--MKDKQYMGER-YIEMI 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7879NP_647626.1 RRM1_RBM12_like 2..75 CDD:409932
RRM_hnRNPH_ESRPs_RBM12_like 355..425 CDD:409699 16/73 (22%)
RRM_SF 478..549 CDD:409669 20/71 (28%)
RRM_SF 700..773 CDD:409669 11/92 (12%)
RRM5_RBM12_like 909..983 CDD:409937 22/74 (30%)
hrpf-1NP_740877.1 RRM_hnRNPH_ESRPs_RBM12_like 7..75 CDD:409699 15/72 (21%)
RRM_hnRNPH_ESRPs_RBM12_like 124..196 CDD:409699 20/72 (28%)
PRK07764 <215..332 CDD:236090 25/152 (16%)
RRM_hnRNPH_ESRPs_RBM12_like 472..542 CDD:409699 22/74 (30%)
Blue background indicates that the domain is not in the aligned region.

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