DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12099 and rnf170

DIOPT Version :9

Sequence 1:NP_647623.1 Gene:CG12099 / 38181 FlyBaseID:FBgn0035232 Length:708 Species:Drosophila melanogaster
Sequence 2:NP_999915.1 Gene:rnf170 / 406612 ZFINID:ZDB-GENE-040426-2572 Length:266 Species:Danio rerio


Alignment Length:116 Identity:29/116 - (25%)
Similarity:43/116 - (37%) Gaps:47/116 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 QAQQHHGLSGRKQRYNKEQFLQANFQFVIRSGAKAQVNGSPDALIDWSYIEQINIQTT----EEL 210
            :.|:.|..|..:.|..:|| |||                           ||::.::.    .::
Zfish    50 EQQRIHPESQERVRVVREQ-LQA---------------------------EQVSSESRHQFYSDM 86

  Fly   211 QCPICLYPPVAAKLTRCGHAYCWPCLLHYLSLSDKTWR--------KCPIC 253
            .||:||...|....|.|||.:|..|::.|       ||        .||||
Zfish    87 SCPVCLQQAVLPVETNCGHLFCGSCIIAY-------WRYGTWLGAISCPIC 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12099NP_647623.1 zf-C3HC4_2 212..253 CDD:290634 16/48 (33%)
rnf170NP_999915.1 RING 88..132 CDD:238093 18/50 (36%)
DUF1232 <208..>253 CDD:294800
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1987
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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