DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pns and SCD1

DIOPT Version :10

Sequence 1:NP_647620.1 Gene:pns / 38178 FlyBaseID:FBgn0035229 Length:1449 Species:Drosophila melanogaster
Sequence 2:NP_850959.1 Gene:SCD1 / 841327 AraportID:AT1G49040 Length:1187 Species:Arabidopsis thaliana


Alignment Length:1521 Identity:289/1521 - (19%)
Similarity:464/1521 - (30%) Gaps:609/1521 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 RFADYFVICGL-------DLDTGLEPDRFAGDNLHCSP--LDRAYKSKPLAHYPENVPWNPFDAH 126
            |..:|||:|||       |.|.|     |.|......|  ||: :.....:.||...|..|    
plant     3 RIFEYFVVCGLGPEMRTVDGDLG-----FHGMQTFYLPALLDQ-FPPTDQSPYPAPPPQLP---- 57

  Fly   127 GICMLSLPQGLRFRTQKHCIE-----PRFHSFATTREDGKRCYGFSLVFYEEIRNRNICGAIHTL 186
             .|:  ||.|:.|.:......     ||.:....|..||.:.:...:.|.:              
plant    58 -TCV--LPAGVEFHSSGFVSSDPASFPRSYPIVLTEGDGSKIFVSCIAFRD-------------- 105

  Fly   187 QSMFITELSNGQQTHSLSRVKQDGPVSRSLPRHFKVAGQAPQSAQSYYDINKDKLYVAKSITLIC 251
                              ||.:|...:..||         |.:            |..|.|.|:.
plant   106 ------------------RVCEDIIEAYRLP---------PNT------------YADKCICLVS 131

  Fly   252 QAPYAFAAQMFLKNLYRCLPRQPGAGISLESYVYNILYEVMLPQPGKS----------IRVYLPP 306
            .||.....:..|:.::.......|:...|...:..::..|.||.|||.          :.|..||
plant   132 HAPNFRVLRNSLEEIFVLCFSSEGSCKPLWDIIAYMVSNVPLPTPGKDRVLFAVENCLLSVEAPP 196

  Fly   307 TEPHLPPIALILQRPLLATELPLLDFPLRLLFKYLGVECVIQLLTCVLLENQVLLRSTDYQRLMI 371
            .:                 .||..|..|:.|.:.|.|:.:|:|.|.||:|.::|:||..|..|.:
plant   197 ED-----------------SLPQADISLQPLVQCLDVDNLIKLFTSVLVERRILIRSNKYSLLTL 244

  Fly   372 VGECITSLLFPFVWPHVYAPILPAALHHFLDAPVPFVMGLHAECEAAHKIGSEATLCFVDIDKKH 436
            |.|.|..|::||.|..||.|:|..:...::|||.|::||||::.:.:: :..:..: .||:|...
plant   245 VSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDVDTSN-LAMDGVV-VVDLDINQ 307

  Fly   437 IQLPEELPVFPHKVDFMAEIGSVLDKFEIERDRDQEPSF---RNGYVG------------RGAGG 486
            |...||:|..|                        ||.|   ||..:.            :|.|.
plant   308 ITTSEEIPQIP------------------------EPEFSTLRNDILKLLHPNVVAIDQLKGFGN 348

  Fly   487 GVSGSGSSGS-----------------------GGVDAMISSCTLPTGLQAARRSKERFQQMQET 528
            .|.....|.|                       ||....|.:....|.....|||:...|..:..
plant   349 SVEQCPKSLSKPWGEDHDLQLRVIFLKCFASILGGYRNFIENKVFSTDAFLKRRSRSTNQPPEPM 413

  Fly   529 VYTLSGSPGGGVVDYQPLIAHPSRIDHVPRIADFLRRKGGIRGAGSPVGS--PTVSLSSSPVGIY 591
            :....||  ...:||.     ..|:....:..:.|.:.....|.|....|  |..|:....:.|.
plant   414 LVQFLGS--FAFLDYL-----ERRLSSDEKSTNLLEKLQDAVGRGQDAMSILPKSSMEPEIITIA 471

  Fly   592 HDVDAVDAT------MPVSTRRAEKQK---------------------LSPVDQYYQDLRINNSV 629
            .......||      .|.|.|..|:::                     .||..:..::...::..
plant   472 EPEVEESATRYTYDRFPASVRSEEQEEKRKQILAAASGALESNGRHPPSSPPGKNTKEDNFSSME 536

  Fly   630 REIFLNRFV---------------------HMFHAYEYFVI------------------------ 649
            |.....|.|                     ....::||..|                        
plant   537 RAAERERMVLDIQVKLQGLWLRLLKLGSDEDPLSSFEYGTILALIESDAEGIGGSGFIECIREHL 601

  Fly   650 ----YPNQARDEWISNRETL------------------------QNFDK-SSFLSDQPEHHRAFL 685
                :...:.:::|:.:|.|                        :.|.| ::.:||..:.|...:
plant   602 YSGWHGQLSEEQFIAVKELLKMAVGRAASRSDLSTVRDALEVSAEMFKKDANNVSDYVQRHLISI 666

  Fly   686 S-----RFL-------------ESQMFATLIDNKILAM--------------W---ESQPDEQ-- 713
            .     ||.             ||..:|||:..:::.:              |   |:..::|  
plant   667 PIWEELRFWEGYFEYLMEQPANESVNYATLVTARLIIVASHMAGLGLPDTEAWNMIETIAEKQKL 731

  Fly   714 -------LQLFDQRVKLLRRRHGENMIAATSYEPCVLSQDSQQGFEKRLNCIDIEVTPPSEILAN 771
                   |:.|...|:.||..:.    .|:|::...:|........|.::..| |...|||  |:
plant   732 GYKLLIKLRGFLSHVQQLRVGYW----GASSFKQQAISAGLPSPRPKDVSVSD-ETQQPSE--AS 789

  Fly   772 RAAYFRSFPLLEKGVLNQECASRGNSLRRVKNGNKWRAREISLDQKPGSNAINRLSANLTTADVS 836
            ..::.:|       :.:::.|||.||..||:   ||          ...||    |:::|.|   
plant   790 GRSWVQS-------MFSRDTASRANSFSRVR---KW----------VSDNA----SSDITAA--- 827

  Fly   837 PALIAQANWTFVERLLKD-------IKSKTKRMLLEKMGNEAVALGLKGDGIEENTLIASMCDLL 894
                ||.......|:||.       :.|.|:|.:.:          |.||..:....|:...|.|
plant   828 ----AQKKIQTNVRVLKGHGGAVTALHSVTRREVCD----------LVGDREDAGFFISGSTDCL 878

  Fly   895 EKIWSHGLQNKQGKSALWAHLQAYLEMQEARGAGDSSGTEQTPPVSSSPGGKMTIATASPALAWN 959
            .|||...|:..:.::.|..|                :||.                         
plant   879 VKIWDPSLRGSELRATLKGH----------------TGTV------------------------- 902

  Fly   960 AMRKRMDYLSTFQTDFDSPPSPNRSRSRDRNKFV-GLEQLCPLPESLEFDVKNVLAMADIKTHIG 1023
                                   |:.|.||.|.| |.:.|    ..:.:|.:....:.::|.|..
plant   903 -----------------------RAISSDRGKIVSGSDDL----SVIVWDKQTTQLLEELKGHDS 940

  Fly  1024 YTRAWVRLSLEKKLLSRHFRTLLSDEALLRSLYKRSAFLRCEEEKEQFLYHLLTLNTVDYFSFTN 1088
            .......||.|:.|.:.|..|:...:  :|:....:...||..          .:.:::|...|.
plant   941 QVSCVKMLSGERVLTAAHDGTVKMWD--VRTDMCVATVGRCSS----------AILSLEYDDSTG 993

  Fly  1089 IYPTTKLPYRVVIFPSRKYGSYHTSSNVWIMVSGTMNETQRVPVPKGSLEFIFHYKNLGLLTTMR 1153
            |...               ....|.:|:|.:.||..                             
plant   994 ILAA---------------AGRDTVANIWDIRSGKQ----------------------------- 1014

  Fly  1154 IGHDNSGPSHKWLVEQVVMRNEVTGHTYKFPCGRWLG--RGVDDDSTERLLVGQRVLTNAKNAEL 1216
                    .||           :.|||      :|:.  |.|:|                   .|
plant  1015 --------MHK-----------LKGHT------KWIRSIRMVED-------------------TL 1035

  Fly  1217 VPGSDTRTPPRTRSPSVQRQETLAPSEIQHQLGNCVNVLV-------KWHYKPSRDRDVGTLTNL 1274
            :.|||..|   .|..||.|             |:|..||.       ...|.|.   |.|.:|..
plant  1036 ITGSDDWT---ARVWSVSR-------------GSCDAVLACHAGPVQSVEYSPF---DKGIITGS 1081

  Fly  1275 LCG-------DDGLVKCLEQVFLCGFRSARFFGRNLYIWDYFTKIKELFEHNLQMELEDSSSSLD 1332
            ..|       |:|.:||::.:.|   .|:.....|            ..|:.|.:...|:|.|| 
plant  1082 ADGLLRFWENDEGGIKCVKNITL---HSSSILSIN------------AGENWLGIGAADNSMSL- 1130

  Fly  1333 SSFSNGSGSGGNSLQRREISSIWRLY 1358
              |...|.:|      .::|. |:||
plant  1131 --FHRPSNAG------TKVSG-WQLY 1147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnsNP_647620.1 uDENN 70..171 CDD:214824 29/113 (26%)
DENN 243..435 CDD:214823 57/201 (28%)
dDENN 626..701 CDD:129037 21/166 (13%)
RUN1_DENND5 839..1091 CDD:439039 45/259 (17%)
PLAT_RAB6IP1 1095..1203 CDD:238855 14/109 (13%)
RUN2_DENND5 1243..1440 CDD:439040 30/130 (23%)
SCD1NP_850959.1 WD40 repeat 1157..1181 CDD:293791
uDENN 1..103 CDD:214824 29/112 (26%)
DENN 123..306 CDD:214823 57/201 (28%)
dDENN 366..430 CDD:129037 12/70 (17%)
WD40 835..1131 CDD:238121 89/510 (17%)
WD40 repeat 904..937 CDD:293791 8/36 (22%)
WD40 repeat 943..978 CDD:293791 7/36 (19%)
WD40 repeat 983..1019 CDD:293791 10/98 (10%)
WD40 repeat 1026..1059 CDD:293791 15/67 (22%)
WD40 repeat 1065..1103 CDD:293791 10/40 (25%)
WD40 repeat 1109..1150 CDD:293791 14/61 (23%)
Blue background indicates that the domain is not in the aligned region.

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