DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pns and dennd5b

DIOPT Version :9

Sequence 1:NP_647620.1 Gene:pns / 38178 FlyBaseID:FBgn0035229 Length:1449 Species:Drosophila melanogaster
Sequence 2:XP_031753574.1 Gene:dennd5b / 100216203 XenbaseID:XB-GENE-1009600 Length:1321 Species:Xenopus tropicalis


Alignment Length:1474 Identity:581/1474 - (39%)
Similarity:814/1474 - (55%) Gaps:264/1474 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 RFADYFVICGLDLDTGLEPDRFA-----------------GDNLHCSPLDRAYKSKPLAHYPENV 118
            |.|.||||||.|.|:|||||..|                 |:|...|||.|.:|||.|||||:||
 Frog    13 RLAHYFVICGTDADSGLEPDELAVLYQWLEADRHGKGHDTGENFEQSPLRRTFKSKVLAHYPQNV 77

  Fly   119 PWNPFDAHGICMLSLPQGLRFRTQKHCIEPRFHSFATTREDGKRCYGFSLVFYEEIRNRNICGAI 183
            .|:|||...:.||.:|:||.||||....:|.||||..|||||.|.|||.|.||||:.:|.||.|:
 Frog    78 EWSPFDQDAVNMLCMPKGLSFRTQADDRDPEFHSFIITREDGSRTYGFVLTFYEEVTSRQICAAM 142

  Fly   184 HTLQSMFITELSNGQQTHSLSRVKQDGPVSRSLPRHFKVAGQAPQS-------AQSY--YDINKD 239
            .||..|...|.||  ..::.|....|           .:|..|.:|       :|.|  |||:||
 Frog   143 QTLYQMHNAEQSN--SVYASSSCSMD-----------SLASSADESDDASLAKSQRYNSYDISKD 194

  Fly   240 KLYVAKSITLICQAPYAFAAQMFLKNLYRCLPRQPGAGISLESYVYNILYEVMLPQPGKSIRVYL 304
            .|||:|.|.||...|:..:.:.||..||:.:.......:.||||::||||||.||.||:|::.|.
 Frog   195 TLYVSKCICLITPLPFMQSCRKFLTQLYKAVTSPQPPPLPLESYIHNILYEVPLPPPGRSLKFYG 259

  Fly   305 PPTEPHLPPIALILQRPLLATELPLLDFPLRLLFKYLGVECVIQLLTCVLLENQVLLRSTDYQRL 369
            ...       |::.||| ..:||||.|:|||..|:.||:|.::||.||||||.|:||.|.|||||
 Frog   260 VYE-------AIVCQRP-GPSELPLSDYPLRETFELLGLENLVQLFTCVLLEMQILLYSQDYQRL 316

  Fly   370 MIVGECITSLLFPFVWPHVYAPILPAALHHFLDAPVPFVMGLHAECEAAHK----IGSEATLCFV 430
            |.|.|.||||||||.|.|||.|||||:|.||||||||::|||.:: |...:    :..||.||||
 Frog   317 MTVAEGITSLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSK-EGTDRSKLELPQEANLCFV 380

  Fly   431 DIDKKHIQLPEELPVFPHKVDFMAEIGSVLDKFEIERDRDQEPSFRNGYVGRGAGGGVSGSGSSG 495
            |||...|:||||.|.||:|::|:.||..||.::                       |:...|:..
 Frog   381 DIDNHFIELPEEFPQFPNKLEFIQEISEVLLQY-----------------------GIPPEGNLH 422

  Fly   496 SGGVDAMISSCTLPTGLQAARRSKERFQQMQETVYTLSGSPGGGVVDYQPLIAHPSRIDHVPRIA 560
            .......:.|..|...:...:..            .|||:   .:..|:.|..:    :.:.|:.
 Frog   423 CSESATKLKSLALDDWVNDKKNG------------NLSGN---NINMYELLKGN----ETIARLQ 468

  Fly   561 DFLRRKGGIRGAGSPVGSPTVSLSSSPVGIYHDVDAVDATMPVSTRRAEKQKLSPVDQYYQDLRI 625
            ...:|.|        :....::| ::|:     |||.|           :||:...::..||.::
 Frog   469 ALTKRTG--------ITMDKINL-AAPL-----VDAED-----------EQKVQCAEKELQDYKL 508

  Fly   626 NNSVREIFLNRFVHMFHAYEYFVIYPNQARDEWISNRETLQNFDKSSFLSDQPEHHRAFLSRFLE 690
            |..:||:|.|||..||..||.|||......:.|::|||.:|||||:||||||||.:..|||||:|
 Frog   509 NVQLREVFANRFTQMFSDYEAFVIQSAHDMESWLNNREQMQNFDKASFLSDQPEPYLPFLSRFIE 573

  Fly   691 SQMFATLIDNKILAMWESQPDEQLQLFDQRVKLLRRRHGE-NMIAATSYEPCVLSQDSQQGFEKR 754
            :|||||.|||||:::|: :.:..|::||.|::.||..:|. ..:.:::|:.|...:::.|..|:|
 Frog   574 TQMFATFIDNKIMSLWD-EKEPLLRVFDSRIQKLRLYNGRAPALRSSNYKKCTALKEAAQAIEQR 637

  Fly   755 LNCIDIEVTPPS--EILANRAAYFRS-FPLLEKGVL------NQECASRGNSLRRVKNGNKWRAR 810
            |..||.....|.  ::...:..|.:. ||.|:..||      |....||..:.:|.|:..:..:.
 Frog   638 LTKIDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLMTGPTNNNRWVSRSATAQRRKDKLRQHSE 702

  Fly   811 EISLD---QKPGSNAINRLSA----------------------------------------NLTT 832
            .:.||   ::|....:.|.::                                        ....
 Frog   703 HLGLDNDLREPSEEIVIRQNSMAFWEWDQGSPPPARPPKKSYSECCLKYMQEARSLGKTVRQPKL 767

  Fly   833 ADVSPALIAQANWTFVERLLKDIKSKTKRMLLEKMGNEAVALGLKGD----GIEENTLIASMCDL 893
            :|:|||:|||.|..|||.|||:.:.||||||:||||:|||.|| .|:    |:||||||||:|||
 Frog   768 SDLSPAVIAQTNSKFVEGLLKECRMKTKRMLVEKMGHEAVELG-HGEANITGLEENTLIASLCDL 831

  Fly   894 LEKIWSHGLQNKQGKSALWAHLQAYLEMQEARGAGDSSGTEQTPPVSSSPGGKMTIATASPALAW 958
            ||:||||||..||||||||:||..:.|.:|.        .|:|....::||              
 Frog   832 LERIWSHGLLVKQGKSALWSHLVQFQEREER--------LERTAESPTAPG-------------- 874

  Fly   959 NAMRKRMDYLSTFQTDFDSPPSPNRSRSRDRNKFVGLEQLCPLPESLEFDVKNVLAMADIKTHIG 1023
                                  |:|.:|.     .|: .|..|..||..|::::..:::|||.:|
 Frog   875 ----------------------PDRRKSD-----TGV-SLPSLRVSLIQDMRHIQNLSEIKTDVG 911

  Fly  1024 YTRAWVRLSLEKKLLSRHFRTLLSDEALLRSLYKRSAFLRCEEEKEQFLYHLLTLNTVDYFSFTN 1088
            ..|.|:||||||||||:|.:.||::::|.|.||||.|||||||||||||||||:||.||||.||:
 Frog   912 RARGWIRLSLEKKLLSQHLKQLLTNQSLTRKLYKRYAFLRCEEEKEQFLYHLLSLNAVDYFCFTS 976

  Fly  1089 IYPTTKLPYRVVIFPSRKYGSYHTSSNVWIMVSGTMNETQRVPVPKGSLEFIFHYKNLGLLTTMR 1153
            ::.|..:||||||.|.:|..:..|:||.||.|||.:.:|..:.:||..||..|..:|||.:||::
 Frog   977 VFTTIMVPYRVVIIPIKKLSNAITTSNPWICVSGELGDTGVMQIPKNLLEMTFESQNLGKMTTVQ 1041

  Fly  1154 IGHDNSGPSHKWLVEQVVMRNEVTGHTYKFPCGRWLGRGVDDDSTERLLVGQRVLTNAKNAELVP 1218
            :||||||...||||:.||:|:|:||||||||||||||:||||.|.||:|:|: ::|...:.:|  
 Frog  1042 LGHDNSGLLAKWLVDCVVVRSEITGHTYKFPCGRWLGKGVDDGSLERVLIGE-LITPTSDDDL-- 1103

  Fly  1219 GSDTRTPPRTRSPSVQRQ--------ETLAPS--EIQHQLGNCVNVLVKWHYKPSRDRDVGTLTN 1273
            |..:||||:.:||:|.|:        :.:.|:  :||..:|..:|.:||..:||.::|  |:||.
 Frog  1104 GKQSRTPPQQKSPTVARRLSITSLTGKNIKPNAGQIQEGIGEAINNIVKHFHKPEKER--GSLTV 1166

  Fly  1274 LLCGDDGLVKCLEQVFLCGFRSARFFGRNLYIWDYFTKIKELFEHNLQMELEDSSSSLDSSFSNG 1338
            ||||:.|||..|||:|..||:|||.|.::::|||:..|....||...|:               |
 Frog  1167 LLCGESGLVSALEQLFHHGFKSARIFQKSVFIWDFIEKAVAYFETTDQI---------------G 1216

  Fly  1339 SGSGGNSLQRREISSIWRLYVQLMDEINGTA--LGKDGKFQLLICLSLREHLLTRLIKPMALTKV 1401
            .|...:.:.|    |..:.:...::.|....  :|||||||||:||..|:|||...|..:|....
 Frog  1217 DGEADHLIPR----SSCKTFCHYVNAIVAAPRHIGKDGKFQLLVCLGARDHLLALWIPLLAECPA 1277

  Fly  1402 THEMYEEESFLRRRNLLTFLIQILEPLDDCHIVLENSITQGIRI 1445
            ...||||.:.||....:..||::|:.|.|.:||||.|:.:|:.:
 Frog  1278 ITRMYEENALLRDPMTVNSLIRVLQTLQDFNIVLEGSLVKGVDV 1321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pnsNP_647620.1 uDENN 70..171 CDD:214824 60/116 (52%)
DENN 243..435 CDD:214823 101/195 (52%)
dDENN 626..701 CDD:129037 44/74 (59%)
RUN <989..1083 CDD:295434 51/93 (55%)
PLAT_RAB6IP1 1095..1203 CDD:238855 62/107 (58%)
RUN 1376..1436 CDD:214736 25/59 (42%)
dennd5bXP_031753574.1 uDENN 11..130 CDD:214824 60/116 (52%)
DENN 197..385 CDD:396629 102/196 (52%)
dDENN 509..584 CDD:129037 44/74 (59%)
RUN 827..971 CDD:397055 82/193 (42%)
PLAT_RAB6IP1 983..1091 CDD:238855 62/107 (58%)
RUN 1174..1311 CDD:413440 53/155 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 181 1.000 Domainoid score I3417
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H44911
Inparanoid 1 1.050 950 1.000 Inparanoid score I336
OMA 1 1.010 - - QHG52593
OrthoDB 1 1.010 - - D35195at33208
OrthoFinder 1 1.000 - - FOG0003741
OrthoInspector 1 1.000 - - otm47708
Panther 1 1.100 - - LDO PTHR46070
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2599
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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