DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Psa and Lvrn

DIOPT Version :9

Sequence 1:NP_728614.1 Gene:Psa / 38175 FlyBaseID:FBgn0261243 Length:1075 Species:Drosophila melanogaster
Sequence 2:XP_038953134.1 Gene:Lvrn / 502160 RGDID:1562779 Length:993 Species:Rattus norvegicus


Alignment Length:931 Identity:260/931 - (27%)
Similarity:411/931 - (44%) Gaps:161/931 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 RLPTNVVPRHYELLLQPNLK-------EFTFTGKTVVQVNVKEPTTQITLNALDIVLDSVEL--- 272
            |||..:||.||:|.|.|.|:       ..||||:..:.|.....|:.:.|::..:....||:   
  Rat    94 RLPPWLVPLHYDLELWPRLQPDNLSTPSLTFTGRVNITVRCTVATSTLLLHSFFLNYKQVEVWGP 158

  Fly   273 ------HFECSKLKPEKIVYSAENETATLEFAQEIPAETQGVLHMSFTGE-LNDKMKGFYRSKYF 330
                  :....::..|.:.::.:.:...|:..|.:...:...|:..|:|: |.:..:|.:.:.| 
  Rat   159 LAPDTRNATVGRVPLENVWFALDMQYVVLDLGQSLDPGSSYELNFDFSGQVLQEGSEGLFLNLY- 222

  Fly   331 GPNGEERFAGV--TQFEATDARRCFPCWDEPAIKATFDITLVVPKDRVALSNMPVIKEDSLPD-- 391
              ..|::...:  ||.|.|.||..|||:||||:||||:||::.....|||||||.:.:....|  
  Rat   223 --TDEDQLRALIATQMEPTFARHVFPCFDEPALKATFNITIIHHPGYVALSNMPQLGQSHRIDVN 285

  Fly   392 GLR--RVRFDRTPIMSTYLVAVVVGEYDYVEGKSDDGVLVRVFTPVGKREQG--TFALEVATKVL 452
            |.|  ...|..||.|.|||||:|:.::||| .:::.|..:||:........|  .||......|.
  Rat   286 GSRWTVTSFHTTPRMPTYLVALVICDFDYV-SRTERGKEIRVWARKDDIADGYLDFAANHTGPVF 349

  Fly   453 PYYKDYFNIAYPLPKMDLIAISDFSAGAMENWGLVTYRETFVLVDPKNTSLMRKQSIALTV-GHE 516
            .:.:|.|||:|||||.|:||:..|..||||||||:.:..:.:|  ..:..|..|:::.|:: .||
  Rat   350 SFLEDLFNISYPLPKTDIIALPTFVNGAMENWGLMIFDASLLL--ELDDDLPEKRAMILSILSHE 412

  Fly   517 IAHQWFGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPEYDIWTQFVTDMYTRALELDSLKNSHP 581
            :.||||||||||.||.::|||||:||:.|....::.:|:......|...:....||.|....|..
  Rat   413 VGHQWFGNLVTMSWWNNIWLNEGFASYFEVGLTNYFYPKVPRNMIFFLTVLHDILEDDHSLESRA 477

  Fly   582 IEVPVGH---PSEIDEIFDEISYNKGASVIRMLHDYIGEDTFRKGMNLYLTRHQYGNTCTEDLWA 643
            :..||.:   ..||:.:||..:|.|||.:..||..::.:..|...:..||....|.|...:|||.
  Rat   478 VSTPVENFTETREINRLFDIYTYKKGACMAWMLAGFLSQHLFINALKSYLETFSYSNAEQDDLWR 542

  Fly   644 ALQEASSK--------NVSDVMTSWTQHKGFPVVSVESE-----------QTSKNQRLLRLKQCK 689
            .:|.|..:        .|..:|.|||...||||:::.:.           :..:||.||      
  Rat   543 HIQMAIDEQSIIHLPATVKRIMDSWTHQSGFPVITLNASTGVVKQEPFYLERVENQTLL------ 601

  Fly   690 FTADGSQADENCLWVVPISVSTSKNPTGIAKTFL-LDKSSM---EVTLDNVDEDDWIKINPGTVG 750
                     .:..|:|||  ...||  ||.:..: ||||||   .:.|.:.| .||:.:|....|
  Rat   602 ---------SHNTWIVPI--FWMKN--GITQPLVWLDKSSMIFPGMKLSDSD-SDWVILNFNVTG 652

  Fly   751 YYRTRYSQEMLEQLMPAVEK--MELPPLDRLGLIDDMFAMVQAGHASTADVLALVDSYRNETNYT 813
            |||..|.:...::|...:||  ..:|.::||.|:.|.||:.:..:......|.|......|....
  Rat   653 YYRVNYDKLGWKKLNQQLEKDPKAIPVINRLQLVSDAFALSKNNYIEIETALDLTKYIAKEDEIL 717

  Fly   814 VWTAITNSLTNLHILISHTDLMEDFHRFGRNLYEPVAYRLGWEPRDGENHLDTLLRSLVLTRLVS 878
            ||..:..:|.|..:                 :|:...|           :|..||:...|.||  
  Rat   718 VWFEVLVNLINREV-----------------VYDVKNY-----------YLYPLLKKYFLKRL-- 752

  Fly   879 FRSSDTIEEAKIRFRR---HVNGTELLPAD--LRTTCY--------------------------- 911
             .|..||..|.||...   ..|...|||..  ..|.|:                           
  Rat   753 -NSIWTIYSAIIRENMASLQDNFLSLLPLKKFFETACWLGLEDCLQLSRELFRKWMAHPETAIPP 816

  Fly   912 ---KAVLQD----GDEKIFNEMLDLY-RATDLHEEQDRISRALGCCGDLKLLRRVIDFAMSSEVR 968
               |.||.:    |..|.::.:.:|| ..|:..|:...:..|:||..|.:.|.|.:::.::....
  Rat   817 QIEKVVLCNAIALGSNKDWDFLFNLYINKTEEQEDLFHLVHAMGCSKDPRTLNRFMEYDITVFPS 881

  Fly   969 AQDSVFVIVAVAINPKGRDMAWEFFKENNKQLLERYQGGFLLSRLIKYLIENFASEERAKEVEEF 1033
            ..:...:|..||.:..||.:|.:|...|   .:..|:...|...|.:|.:..:.:      :.|.
  Rat   882 RFNETNLIEVVAESEVGRYVAKDFLINN---WVAVYESPSLSPLLQQYFVSVWTT------IAEH 937

  Fly  1034 LQVNQIPGCE-RTVSQAVETI 1053
            ..|:....|: |:....|..:
  Rat   938 SSVHLREDCQHRSAGYGVAAV 958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PsaNP_728614.1 Peptidase_M1 218..604 CDD:279741 139/414 (34%)
M1_APN_2 227..667 CDD:189008 155/476 (33%)
ERAP1_C 742..1052 CDD:288671 75/352 (21%)
LvrnXP_038953134.1 M1_APN-Q_like 102..569 CDD:341064 153/472 (32%)
ERAP1_C 643..915 CDD:403137 67/305 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D110058at2759
OrthoFinder 1 1.000 - - FOG0000044
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.