DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psa and Lta4h

DIOPT Version :10

Sequence 1:NP_728614.1 Gene:Psa / 38175 FlyBaseID:FBgn0261243 Length:1075 Species:Drosophila melanogaster
Sequence 2:NP_001025202.1 Gene:Lta4h / 299732 RGDID:1311333 Length:611 Species:Rattus norvegicus


Alignment Length:512 Identity:124/512 - (24%)
Similarity:204/512 - (39%) Gaps:100/512 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 RHYELLLQPNLKEFTFTGKTVVQVNVKEPTTQ-ITLNALDIVLDSVELHFECSKLKPEKIVYSAE 289
            :|..|....:......||...:.|..:|...: :||:..|:.:              ||:|.:.:
  Rat    20 QHLHLRCSVDFARRALTGTAALTVQSQEDNLRSLTLDTKDLTI--------------EKVVINGQ 70

  Fly   290 NETATLEFAQEIPAETQG--------------------VLHMSFTGELNDKMKGFYRSKYFGP-- 332
            ....||       .|:||                    |:.:||  |.:.|....   ::..|  
  Rat    71 EVKYTL-------GESQGYKGSPMEISLPIALSKNQEVVIEISF--ETSPKSSAL---QWLTPEQ 123

  Fly   333 -NGEERFAGVTQFEATDARRCFPCWDEPAIKATFDITLVVPKDRVALSNMPVIKEDSLP---DGL 393
             :|::.....:|.:|...|...||.|.|::|.|:...:.|||:.|||  |..|::...|   |..
  Rat   124 TSGKQHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVAL--MSAIRDGEAPDPEDPS 186

  Fly   394 RRV-RFDRTPIMSTYLVAVVVGEYDYVEGKSDDGVLVRVFTPVGKREQGTFALEVATKVLPYYKD 457
            |:: ||::...:..||:|:|||..:    ....|....|::...:.|:..:.......:|...:|
  Rat   187 RKIYRFNQRVPIPCYLIALVVGALE----SRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED 247

  Fly   458 YFNIAYPLPKMDLIAI-SDFSAGAMENWGLVTYRETFVLVDPKNTSLMRKQSIALTVGHEIAHQW 521
             ....|...:.||:.: ..|..|.|||..|     |||    ..|.|...:|::..:.|||:|.|
  Rat   248 -LGGPYVWGQYDLLVLPPSFPYGGMENPCL-----TFV----TPTLLAGDKSLSNVIAHEISHSW 302

  Fly   522 FGNLVTMEWWTHLWLNEGYASFVEFLCVHHLFPE-------YDIWTQFVTDMYTRALELDSLKNS 579
            .|||||.:.|.|.|||||:..::|......||.|       ...|.:....:.|       ...|
  Rat   303 TGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFHALGGWGELQNTIKT-------FGES 360

  Fly   580 HPIEVPVGHPSEIDE--IFDEISYNKGASVIRMLHDYI-GEDTFRKGMNLYLTRHQYGNTCTEDL 641
            ||....|....::|.  .:..|.|.||.:::..|...: |.:.|...:..|:.:..|.:..|:| 
  Rat   361 HPFTKLVVDLKDVDPDVAYSSIPYEKGFALLFYLEQLLGGPEVFLGFLKAYVEKFSYQSVTTDD- 424

  Fly   642 WAALQEASSKNVSDVM-----TSWTQHKGFPVVSVESEQTSKN------QRLLRLKQ 687
            |.:...|..|:..|::     .:|....|.|.|....:.|..|      ||.:..|:
  Rat   425 WKSFLYAHFKDKVDLLNQVDWNAWLYAPGLPPVKPNYDVTLTNACIALSQRWVTAKE 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PsaNP_728614.1 M1_APN-Q_like 227..662 CDD:341064 116/478 (24%)
ERAP1_C 741..1055 CDD:463368
Lta4hNP_001025202.1 leuko_A4_hydro 6..608 CDD:274120 124/512 (24%)
Blue background indicates that the domain is not in the aligned region.

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