DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cue and lrp1ab

DIOPT Version :10

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_021325646.1 Gene:lrp1ab / 565797 ZFINID:ZDB-GENE-030131-7126 Length:4562 Species:Danio rerio


Alignment Length:678 Identity:167/678 - (24%)
Similarity:253/678 - (37%) Gaps:182/678 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LTPAHGTPLEWDFAVTLR----TKIQFMD----------SSWQTIATAAHEFDELSALTFDESEE 71
            |.|  |.| .|.:..|.:    .:|..||          ::|.|...:..:....|:.:...|  
Zfish  3884 LNP--GMP-NWVYEQTFQGDNNVRIDAMDLHVKTNRIFWTNWHTYGISCFQLPSQSSASGPTS-- 3943

  Fly    72 LIYFNDLKHRNGSIFSLKRDLIAANHVAEQTIAR---TGNESVGGLAYDPLNMNLFWSDTEQRKI 133
                |..:|...|               |.|::.   .|.:...|:|.|.:..||:|:|:.:..|
Zfish  3944 ----NSHRHTRQS---------------EGTVSNLEIPGLKMPRGIAVDWVAGNLYWTDSGRDVI 3989

  Fly   134 FFAPIHGSATPQVLVDLSAEGGRPDGVAVDVCRRKLYWTNSNVTHPTVERINLDGSNRTVIISSN 198
            ..|.|.|.....::..:..|   |..:.||..|..:|||:.. .||.:|...:||:.|..::..|
Zfish  3990 EVAQITGQHRKTLISGMIDE---PHAIVVDPQRGTMYWTDWG-NHPKIETAAMDGTLRQTLVHEN 4050

  Fly   199 IDMPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVV---LKDKHHEPLNLAVTNDAIYW 260
            |..|.|:.||..::||:|.|....|..||   :|||||..|.   ||:....|.::.:..|.||.
Zfish  4051 IQWPTGLAVDYFNERLYWADSKLSVISSV---RLDGSDPVVAVSNLKNNLLRPYSIDIFEDYIYG 4112

  Fly   261 TDRTTRAVWSHPKVPVIKVTTTSKPDEEDST----DSTD------FKDPEPVAEDCPLVRVANLS 315
            ...|...|:        :|....|...|:.|    .:||      :|.|| :...|...:...|.
Zfish  4113 VTHTNNIVF--------RVNKFGKGQAENLTTGINHATDIVLYHRYKQPE-MTNPCDRKKCEWLC 4168

  Fly   316 EEARGIVARTGFYQRLQKDH-----HCASIVRKVKERVDEQSRKFEIRSLLDQKIKVLEDERCMN 375
                 :::.:|.......||     .|      ||.:..:|   |......|.        :|.|
Zfish  4169 -----LLSPSGPVCICPNDHVPDNGTC------VKVQPPDQ---FPFSPTCDL--------QCQN 4211

  Fly   376 DGE---YRAATDLCICPTGFKGSRCEIRECHNYCVH-GTCQMSELAYPKCYCQPGFKGERCELSV 436
            .|.   .......|.|||.::|.||||.:|.:||.: |||..|....|.|.||.||.|.||.|.:
Zfish  4212 GGSCYLNPLKNPKCRCPTSYRGERCEINQCRDYCQNRGTCSPSRTGAPTCRCQTGFTGPRCNLYI 4276

  Fly   437 CSGLCLNGGHCRVS---------------------------KDE-------NEAPSCECPAKFGG 467
            |...|.|||:|.||                           |::       |....|:|..||.|
Zfish  4277 CENYCQNGGNCAVSLGNQPTCRCPPGFLGDQCQYRQCEDFCKNDGQCLELNNGTKHCQCSDKFFG 4341

  Fly   468 ARCEQNSTEIC----------SLFCRLLKH--EPEMYVPFGCHSICEELAQDNSTNIAIPQYQHL 520
            .:||.:..|.|          .:.|:...:  .|..|.   |...|.|      ...::..|.:|
Zfish  4342 PQCELDKCEYCGTGKCEKLQTGITCKCADNTKRPTCYT---CDDFCIE------GQCSVDTYTNL 4397

  Fly   521 EVCLTPRVW-------------------TSSVIIILVVGIVSSLLLVAVIVQGIRRLY------K 560
            ..|.....|                   |.||:|.:::.::.:||:||.|:...:|:.      |
Zfish  4398 PQCRCHTGWSGFRCELNVAPVQNSDSGNTPSVVIPVMLLLLLALLVVAAILWYKKRMRGSVMRGK 4462

  Fly   561 PKRPRIRKTFVVRKQARTNSAGDTPLTN 588
            |. .|..:....:.|..||.|.:..:.|
Zfish  4463 PS-SRCSRAKGFQHQRMTNGAMNVEIGN 4489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 TerD_like 48..>85 CDD:473128 6/36 (17%)
YvrE <73..>164 CDD:442613 20/93 (22%)
LY 101..141 CDD:214531 12/42 (29%)
Ldl_recept_b 167..208 CDD:459654 13/40 (33%)
LY 193..237 CDD:214531 17/43 (40%)
lrp1abXP_021325646.1 LDLa 36..69 CDD:197566
LDLa 81..114 CDD:197566
FXa_inhibition 168..198 CDD:464251
NHL <292..479 CDD:302697
NHL repeat 292..325 CDD:271320
LY 323..365 CDD:214531
NHL repeat 332..368 CDD:271320
LY 368..408 CDD:214531
NHL repeat 373..413 CDD:271320
NHL repeat 421..467 CDD:271320
FXa_inhibition 493..526 CDD:464251
LY 558..600 CDD:214531
LY 602..640 CDD:214531
LY 647..695 CDD:214531
LY <707..740 CDD:214531
FXa_inhibition 811..846 CDD:464251
LDLa 857..889 CDD:197566
LDLa 899..932 CDD:238060
LDLa 940..971 CDD:238060
LDLa 982..1015 CDD:238060
LDLa 1019..1052 CDD:238060
LDLa 1066..1101 CDD:238060
LDLa 1110..1144 CDD:238060
LDLa 1149..1185 CDD:238060
FXa_inhibition 1188..1224 CDD:464251
Vgb 1277..1506 CDD:443399
LY 1339..1381 CDD:214531
Ldl_recept_b 1631..1670 CDD:459654
LY 1653..1696 CDD:214531
LY 1700..1739 CDD:214531
LY 1739..1780 CDD:214531
FXa_inhibition 1853..1889 CDD:464251
LY 1919..1959 CDD:214531
LY 1962..2002 CDD:214531
Ldl_recept_b 2023..2064 CDD:459654
LY 2048..2090 CDD:214531
FXa_inhibition 2162..2197 CDD:464251
SGL 2288..>2429 CDD:462480
Ldl_recept_b 2346..2388 CDD:459654
LY 2372..2413 CDD:214531
FXa_inhibition 2483..2518 CDD:464251
LDLa 2523..2559 CDD:412164
LDLa 2567..2601 CDD:238060
LDLa 2606..2640 CDD:238060
LDLa <2667..2689 CDD:238060
LDLa 2697..2731 CDD:238060
LDLa 2738..2769 CDD:197566
LDLa 2777..2810 CDD:197566
LDLa 2821..2853 CDD:197566
Ldl_recept_a 2861..2895 CDD:395011
LDLa 2908..2942 CDD:238060
FXa_inhibition 2954..2983 CDD:464251
EGF_CA 2985..3019 CDD:214542
LY 3052..3096 CDD:214531
LY 3097..3139 CDD:214531
LY 3141..3183 CDD:214531
LY 3184..3226 CDD:214531
LY 3227..3267 CDD:214531
FXa_inhibition 3297..3333 CDD:464251
LDLa 3337..3368 CDD:238060
LDLa 3377..3411 CDD:238060
LDLa 3416..3451 CDD:238060
LDLa 3455..3488 CDD:197566
LDLa 3496..3529 CDD:197566
LDLa 3539..3573 CDD:238060
LDLa 3578..3612 CDD:238060
LDLa 3616..3650 CDD:238060
LDLa 3658..3690 CDD:238060
LDLa 3699..3735 CDD:238060
LDLa 3741..3776 CDD:238060
EGF_CA 3825..3855 CDD:214542
LY 3963..3999 CDD:214531 12/35 (34%)
Ldl_recept_b 4020..4061 CDD:459654 14/41 (34%)
LY 4044..4085 CDD:214531 16/43 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.