DRSC/TRiP Functional Genomics Resources

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Protein Alignment cue and lrp10

DIOPT Version :10

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_688859.4 Gene:lrp10 / 560361 ZFINID:ZDB-GENE-140418-2 Length:748 Species:Danio rerio


Alignment Length:325 Identity:72/325 - (22%)
Similarity:106/325 - (32%) Gaps:108/325 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 VDEQSRKFEIRSLLDQKIKVLEDERCMNDGEYRAATDLC-----ICPTGFKGSRCEIRECHNYCV 407
            |:.:||. .:.||:.::..|||. |..| ..|| .||.|     :|.....|.....:.|..   
Zfish   304 VEVESRT-GLLSLIYRREPVLEG-RGFN-ATYR-ITDYCLPWEELCGGSLGGCYTADQRCDG--- 361

  Fly   408 HGTCQMSELAYPKCY-CQPGF----------KGERCELSVCSGL---CLNGGHCRVSKDENEAPS 458
            |..|..:.|....|: |:.|.          .|.:.|..||...   |....:|....||.|...
Zfish   362 HWDCPETGLDEEACWGCKAGSFLCAMGGIKKAGHQTENPVCYSFHERCNYQLNCPDGTDERECTI 426

  Fly   459 CECPAKF---------------GGARCEQNSTEI-C---------------SLFCRLLKHEPEMY 492
            |: |..|               |...|:..:.|: |               ||.|.||     :.
Zfish   427 CQ-PGTFHCDSDRCVFESWRCDGQVDCKDGTDELNCTATLPRKVITAATVGSLVCGLL-----LV 485

  Fly   493 VPFGC-----------HSICEELAQDNSTNI---AIPQYQHLEVCLTPRVWTSSVIIILVVGIVS 543
            :..||           :|:...:.:..:..|   |.|.|..|                :..||:.
Zfish   486 IAMGCTCKLYSLRTREYSLFAPITRQEAELIQQQAPPSYGQL----------------IAQGIIP 534

  Fly   544 SL---------LLVAVIVQGIRRLYKPK-----RPRIRKTFVVRKQARTNSAGDTP-LTNRPLAT 593
            .:         ..|::.::||.:|.:..     |.|.|..||.|...|....|..| .|:||..|
Zfish   535 PVEDFPTENPNETVSLSLRGILQLLRQDNASSLRRRRRPRFVRRAVRRLRRWGLIPRATSRPTQT 599

  Fly   594  593
            Zfish   600  599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 TerD_like 48..>85 CDD:473128
YvrE <73..>164 CDD:442613
LY 101..141 CDD:214531
Ldl_recept_b 167..208 CDD:459654
LY 193..237 CDD:214531
lrp10XP_688859.4 CUB 36..136 CDD:238001
LDLa 142..181 CDD:238060
CUB 229..334 CDD:412131 12/33 (36%)
LDLa 378..424 CDD:238060 10/45 (22%)
LDLa 427..461 CDD:238060 6/34 (18%)
Blue background indicates that the domain is not in the aligned region.

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