DRSC/TRiP Functional Genomics Resources

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Protein Alignment cue and sorl1

DIOPT Version :9

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_005157607.1 Gene:sorl1 / 497306 ZFINID:ZDB-GENE-050208-22 Length:2213 Species:Danio rerio


Alignment Length:540 Identity:117/540 - (21%)
Similarity:193/540 - (35%) Gaps:164/540 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 IATAAHEFD---------------ELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAE 100
            :..:.|.:|               |..||.||..:..:|:.|:     |:.:::| |.......:
Zfish   766 VRNSIHRYDLASGTDQQLPLTGLHEAVALDFDYEKNCLYWADI-----SLDTIQR-LCMNGSSGQ 824

  Fly   101 QTIARTGNESVGGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLVDLSAEGGRPDGVAVDVC 165
            :.|.:...::|..|::||::..|:|.|...:||..:...|... :.||: |:...:|..:|:...
Zfish   825 EVIVKRDLQNVEALSFDPISRLLYWVDAGAQKIEVSNSDGDLR-RTLVN-SSVVDQPRALALMPA 887

  Fly   166 RRKLYWTNSNVTHPTVERINLDGSNRTVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSVESS 230
            ...::||:.......|.|..:||||.:.|:|..:..|.||..|:  ..|:|.:....   .:|.:
Zfish   888 ESLMFWTDWGDRAAGVYRSWMDGSNISCIVSEGVRWPNGITADE--SWLYWTEAYGD---RIERA 947

  Fly   231 KLDGSDRQVVLKDKHHEPLNLAVTNDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTD 295
            ..:|..|.|:::...| |..:||..:.:||.|      ||  ::.:.|...:..||.|       
Zfish   948 DFNGGSRTVIMEGLPH-PYAIAVFKNDLYWDD------WS--RMGIFKAPKSGSPDSE------- 996

  Fly   296 FKDPEPVAEDCPLVRVANLSEEARGIVARTGFYQRLQKDHH-CASIVRKVKERVDEQSRKFEIRS 359
                         :.|..|:    |::....||:...:..: ||                     
Zfish   997 -------------LIVGRLT----GVMDLKIFYKGKNRGQNACA--------------------- 1023

  Fly   360 LLDQKIKVLEDERCM-NDGEYRAATDLCICPTGFKGS-------RCEI---RECHN--------- 404
              ||...:|    |: ..|..|.    |:||.|...|       :|:.   .:.||         
Zfish  1024 --DQPCSLL----CLPQPGNQRH----CVCPDGVPTSVLPSGERQCQCPSGYQLHNNTCVKTEHT 1078

  Fly   405 ------YCVHGTCQMS---------------ELAYPKCYCQPGFKGERCELSVCSGLCL------ 442
                  .|.:|.|..|               |...|...|.|..: .||   |.||.|:      
Zfish  1079 CLPNQHRCANGKCISSIWKCDSDNDCGDMSDEQECPTTSCDPSVQ-FRC---VASGSCIPLAFKC 1139

  Fly   443 -NGGHCRVSKDENEAPSCEC-PAKFGGA---------RCEQNSTEICSLFCRLLKHEPEMYVPFG 496
             :...|..:.||....|.:| |.:|..|         ||:.::.      ||....|....|.  
Zfish  1140 DHEDDCGDNSDEEHCESHKCGPGEFTCARGACIRDAWRCDGDND------CRDWSDEANCTVG-- 1196

  Fly   497 CHSICEELAQDNSTNIAIPQ 516
             |..||..:....|...|||
Zfish  1197 -HHTCESSSFQCHTGHCIPQ 1215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 LY 101..141 CDD:214531 10/39 (26%)
Ldl_recept_b 167..208 CDD:278487 13/40 (33%)
LY 193..237 CDD:214531 10/43 (23%)
sorl1XP_005157607.1 VPS10 130..754 CDD:214740
Sortilin_C 589..754 CDD:292523
LY 781..822 CDD:214531 10/46 (22%)
LY 825..864 CDD:214531 10/38 (26%)
LY 868..912 CDD:214531 11/44 (25%)
LY 916..954 CDD:214531 10/42 (24%)
LDLa 1079..1113 CDD:238060 5/33 (15%)
LDLa 1118..1154 CDD:238060 11/39 (28%)
LDLa 1159..1193 CDD:238060 9/39 (23%)
LDLa 1242..1273 CDD:238060
LDLa 1282..1310 CDD:197566
LDLa 1327..1361 CDD:238060
LDLa 1376..1405 CDD:238060
LDLa 1421..1455 CDD:238060
LDLa 1474..1509 CDD:238060
LDLa 1522..1551 CDD:238060
FN3 1559..>1630 CDD:238020
FN3 1653..1743 CDD:238020
FN3 1750..1827 CDD:238020
FN3 1931..2007 CDD:238020
FN3 2022..2097 CDD:214495
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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