DRSC/TRiP Functional Genomics Resources

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Protein Alignment cue and ImpE1

DIOPT Version :10

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_524849.2 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster


Alignment Length:165 Identity:39/165 - (23%)
Similarity:52/165 - (31%) Gaps:65/165 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 VDEQSRKFEIRSLLDQKIKVLEDERCMNDGEYRAATDLCICPTGFKGSRCEIR---ECHNYCVH- 408
            |.:.||..|:            .::|.:|.:         |....|||.|...   ||..|.|. 
  Fly    39 VVDASRSLEL------------GDKCQHDMD---------CTDFIKGSSCSALGYCECAPYFVQL 82

  Fly   409 ------------GTCQMSELAYPK----------CYCQPGFKGERCELSVCSG------LCLNGG 445
                        |.||:||....|          |.|..||...|  ...|.|      :|.:..
  Fly    83 DSKRCLSSQLLGGDCQLSEQCSMKVANSSCLEGACRCVEGFLQFR--KHTCLGPAHPGAVCYSHA 145

  Fly   446 HCRVSKDENEA----PS----CEC--PAKFGGARC 470
            ||::.......    |:    |:|  |||..|..|
  Fly   146 HCQMFDTRTHCDFLIPNLFGRCQCTSPAKMVGGLC 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 TerD_like 48..>85 CDD:473128
YvrE <73..>164 CDD:442613
LY 101..141 CDD:214531
Ldl_recept_b 167..208 CDD:459654
LY 193..237 CDD:214531
ImpE1NP_524849.2 EB 75..131 CDD:460294 14/57 (25%)
rne <795..981 CDD:236766
LDLa 1404..1437 CDD:238060
LDLa 1448..1483 CDD:238060
LDLa 1493..1524 CDD:238060
Blue background indicates that the domain is not in the aligned region.

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