DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cue and LRP5

DIOPT Version :9

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_011543331.1 Gene:LRP5 / 4041 HGNCID:6697 Length:1662 Species:Homo sapiens


Alignment Length:426 Identity:102/426 - (23%)
Similarity:164/426 - (38%) Gaps:133/426 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 RTKIQFMDSSW----QTIATAAHEFDELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHV 98
            |..::.:|:..    .||..:.  .::.:|:.|..|:..:|:.|:...     ::|:..:.....
Human    49 RRDVRLVDAGGVKLESTIVVSG--LEDAAAVDFQFSKGAVYWTDVSEE-----AIKQTYLNQTGA 106

  Fly    99 AEQTIARTGNESVGGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLV--DLSAEGGRPDGVA 161
            |.|.:..:|..|..|||.|.:...|:|:|:|..:|..|.::|::. :||.  ||.    :|..:|
Human   107 AVQNVVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSR-KVLFWQDLD----QPRAIA 166

  Fly   162 VDVCRRKLYWTNSNVTHPTVERINLDGSNRTVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFS 226
            :|.....:|||:...| |.:||..:|||.|.:|:.|:|..|.|:.:|....:|:|. |.|..|  
Human   167 LDPAHGYMYWTDWGET-PRIERAGMDGSTRKIIVDSDIYWPNGLTIDLEEQKLYWA-DAKLSF-- 227

  Fly   227 VESSKLDGSDRQVVLKDKHHEPLNLAVTNDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDST 291
            :..:.||||.||.|::.....|..|.::.|.:||||..||::.:..|                  
Human   228 IHRANLDGSFRQKVVEGSLTHPFALTLSGDTLYWTDWQTRSIHACNK------------------ 274

  Fly   292 DSTDFKDPEPVAEDCPLVRVANLSEEARGIVARTGFYQRLQKDHHCASIVRKVKERVDEQSRKFE 356
                                            |||                         .::.|
Human   275 --------------------------------RTG-------------------------GKRKE 282

  Fly   357 IRSLL--DQKIKVLEDERCMNDGEYRAATDLCICPTGFKGSRCEIRECHNYCVHGTCQM--SELA 417
            |.|.|  ...|:||..||                 ..|..:|||  |.:..|.| .|.:  ||..
Human   283 ILSALYSPMDIQVLSQER-----------------QPFFHTRCE--EDNGGCSH-LCLLSPSEPF 327

  Fly   418 YPKCYCQPGFKGERCELSVCSGLCLNGGHCRVSKDE 453
            | .|.|..|.:           |..||..|:...:|
Human   328 Y-TCACPTGVQ-----------LQDNGRTCKAGAEE 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 LY 101..141 CDD:214531 13/39 (33%)
Ldl_recept_b 167..208 CDD:278487 16/40 (40%)
LY 193..237 CDD:214531 15/43 (35%)
LRP5XP_011543331.1 NHL <46..>178 CDD:302697 34/140 (24%)
NHL repeat 74..113 CDD:271320 8/43 (19%)
LY 111..151 CDD:214531 13/39 (33%)
NHL repeat 116..157 CDD:271320 14/41 (34%)
Ldl_recept_b 172..212 CDD:278487 16/40 (40%)
LY 196..238 CDD:214531 15/44 (34%)
FXa_inhibition 308..345 CDD:291342 15/51 (29%)
LY 375..415 CDD:214531
LY 417..459 CDD:214531
LY 460..503 CDD:214531
LY 504..546 CDD:214531
LY 547..580 CDD:214531
FXa_inhibition 614..649 CDD:291342
NHL 694..887 CDD:302697
LY 719..761 CDD:214531
NHL repeat 729..765 CDD:271320
NHL repeat 772..811 CDD:271320
NHL repeat 856..880 CDD:271320
FXa_inhibition 915..950 CDD:291342
LY 979..1018 CDD:214531
LY 1069..1112 CDD:214531
LY 1113..1155 CDD:214531
FXa_inhibition 1226..1262 CDD:291342
Ldl_recept_a 1267..1304 CDD:278486
LDLa 1307..1341 CDD:238060
LDLa 1345..1379 CDD:238060
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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