DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cue and wry

DIOPT Version :9

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_995611.2 Gene:wry / 33361 FlyBaseID:FBgn0051665 Length:1157 Species:Drosophila melanogaster


Alignment Length:618 Identity:118/618 - (19%)
Similarity:179/618 - (28%) Gaps:251/618 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 IQFMDSSWQTIATAAH---EFDELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAA------- 95
            |.|.::.:||.|.|.:   ...|.|...|..|:||  :|::...|      ||.|:.|       
  Fly   352 IDFANTKFQTDADAPNPPASHPEFSTTKFYNSKEL--YNEMLLHN------KRKLMKAAKAEGSP 408

  Fly    96 -NHVAEQTIARTGNESVGGLAYDPLNMNL----------------------------FWSDTEQR 131
             ....:.|.|.:.|.:..|..:.|.....                            :..:.::.
  Fly   409 IKSAEDTTRATSSNVTPEGKTFGPTTTTAAGSTATTTAESTTTAATTTRLPATTTGKYQKELKRA 473

  Fly   132 KIFFAPIHGSATPQVLVDLSAEGGRPDGVAVDVCRRKLYWTNSNVTHPTVERINL--------DG 188
            |:....:    ||...||.|.  ..|..            |.|..|..|.....|        ..
  Fly   474 KLLLKAL----TPPKSVDKST--ASPSS------------TTSTSTSTTTTMATLLATARTRPSA 520

  Fly   189 SNRTVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQV--VLKDKHHEPLNL 251
            :|.|...|..|..||  ::.:|.:                  |::..:.::  |.:|.|      
  Fly   521 ANPTKTASKPIARPR--ILSRLQE------------------KINSLECEIPNVPQDSH------ 559

  Fly   252 AVTNDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFK-DPEPVAEDCPLVRV---- 311
                   .|....|     |..:..|..|...||||....:...:: :.|..:.|..:|.:    
  Fly   560 -------LWRGNET-----HELLLPIVTTEHCKPDEHCVPNVLTWRGEAEIQSGDILIVEINDAM 612

  Fly   312 ANLSEE---ARGIVARTGFYQRLQKDH-HC-------------------------------ASIV 341
            .|.|.|   ....|..|..||..:..| ||                               .:::
  Fly   613 LNPSHEPNNTSSAVHATQVYQVTRSGHEHCDVTEGVLLDITPLVVDGRKLVTLYDKDLTEGVNLL 677

  Fly   342 RKVKERVDEQSRKFEIRSLLD------------------------------------QKIKVLED 370
            ..|.|....|..:.::.:..|                                    ::|.....
  Fly   678 IVVSELWGAQCVRLKVTTKTDNCGENADCSGKGVCYSNSGMEEYECQCCSGFAGPHCEEIDACNP 742

  Fly   371 ERCMNDGEYRAATDL----------CICPTGFKGSRCE--------------------------- 398
            ..|.|:|   ...||          |:||.|:.|..|:                           
  Fly   743 SPCTNNG---ICVDLSQGHEGNSYQCLCPYGYAGKNCQYESDPCNPAECMNGGSCVGNSTHFRCD 804

  Fly   399 -------------IRECHNY-CVHGTCQMSELAYPKCYCQPGFKGERC--ELSVC-SGLCLNGGH 446
                         :.||.:. ||||.|...|..: :|:|||||.||.|  |.:.| |..|.|||.
  Fly   805 CAPGFTGPLCQHSLNECESSPCVHGICVDQEDGF-RCFCQPGFAGELCNFEYNECESNPCQNGGE 868

  Fly   447 CRVSKDENEAPSCECPAKFGGARCEQNSTEICS 479
            |   .|...:..|.|...|.|.|| |...:.|:
  Fly   869 C---IDHIGSYECRCTKGFSGNRC-QIKVDFCA 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 LY 101..141 CDD:214531 6/67 (9%)
Ldl_recept_b 167..208 CDD:278487 11/48 (23%)
LY 193..237 CDD:214531 6/43 (14%)
wryNP_995611.2 EGF_CA 737..777 CDD:238011 11/42 (26%)
EGF 783..812 CDD:278437 0/28 (0%)
EGF_CA 819..851 CDD:238011 16/32 (50%)
EGF_CA 856..890 CDD:238011 14/37 (38%)
EGF_CA 893..927 CDD:238011 1/5 (20%)
EGF_CA <941..970 CDD:238011
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24044
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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