DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cue and yl

DIOPT Version :10

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster


Alignment Length:519 Identity:107/519 - (20%)
Similarity:178/519 - (34%) Gaps:187/519 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 AHEFDELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAEQTIARTGNESVGGLAYDPL 119
            |....::..:.:|.|.  ||:.::::...||.....|  .:|   .:.:..:|.::...||.|.|
  Fly   427 AGNLSKVIGVAYDGSH--IYWTNIQNEAESIVKANGD--GSN---AEILLTSGLDAPEDLAVDWL 484

  Fly   120 NMNLFWSDTEQRKIFFAPIHGSATPQVLVDLSAEGGRPDGVAVDVCRRKLYWTNSNVTHPTVERI 184
            ..|:::||...|.|......| ....|||  :.:..:|..:||...:..::||:.. ..|.:.|.
  Fly   485 TQNIYFSDNIMRHIAVCSNDG-LNCAVLV--TQDVHQPRSLAVWPQKGLMFWTDWG-EKPMIGRA 545

  Fly   185 NLDGSNRTVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVVLKDKHHEPL 249
            ::|||....|:|.||:.|.||.:|....|::|:|...|   ||::.:.||:.|:.||......|.
  Fly   546 SMDGSRSRPIVSDNIEWPNGIALDMHQQRIYWVDAKLG---SVQTVRPDGTGRRTVLDGMLKHPY 607

  Fly   250 NLAVTNDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFKDPEPVAEDCPLVRVANL 314
            .||:..|.:||:|..|::|.:..|.                                        
  Fly   608 GLAIFEDQLYWSDWATKSVHACHKF---------------------------------------- 632

  Fly   315 SEEARGIVARTGFYQRLQKDHHCASIVRKVKERVDEQSRKFEIRSLLDQKIKVLEDERCMNDGEY 379
                      :|      |||                              ::|..:|.:     
  Fly   633 ----------SG------KDH------------------------------RILAKDRTI----- 646

  Fly   380 RAATDLCICPTGFKGSRCEIRECHNYCVHGTCQMSELAYPKCYCQPGFKGERCELSVCSGLCL-- 442
                                     |.||       :.:|.  .||. ....||.:.||.|||  
  Fly   647 -------------------------YAVH-------IYHPA--KQPN-SPHGCENATCSHLCLLA 676

  Fly   443 ---NGGHCRVSKDENEAPSCECPAKFGGARCEQNSTEICSLFCRLLKHEPEMYV----------- 493
               .|||           ||.||   .|.|...:...     |.|::....:::           
  Fly   677 EPEIGGH-----------SCACP---DGMRLAPDHRR-----CMLMEKRQRLFIGLGQVLLEIEH 722

  Fly   494 -PFGCHSICE---------ELAQD--NSTNIAIPQYQHLEVCLTPRVWTSSVIIILVVGIVSSL 545
             .||.|.:.:         |:..:  |.:.|.....|.|.:...|....|:|::...:|.||:|
  Fly   723 TAFGRHQVSKSYTLPCLINEMVYNRINGSLIIADNDQRLILEFQPESHESNVLVRSNLGNVSAL 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 TerD_like 48..>85 CDD:473128 5/29 (17%)
YvrE <73..>164 CDD:442613 23/90 (26%)
LY 101..141 CDD:214531 10/39 (26%)
Ldl_recept_b 167..208 CDD:459654 14/40 (35%)
LY 193..237 CDD:214531 16/43 (37%)
ylNP_996433.1 LDLa 90..124 CDD:238060
LDLa 131..166 CDD:238060
LDLa 184..216 CDD:238060
LDLa 227..262 CDD:238060
LDLa 271..302 CDD:238060
FXa_inhibition 352..387 CDD:464251
Ldl_recept_b 442..483 CDD:459654 9/47 (19%)
LY 466..508 CDD:214531 11/42 (26%)
Ldl_recept_b 529..569 CDD:459654 14/40 (35%)
LY 553..595 CDD:214531 16/44 (36%)
LY 596..637 CDD:214531 14/96 (15%)
FXa_inhibition 669..700 CDD:464251 14/49 (29%)
LY 774..815 CDD:214531 5/13 (38%)
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060
LDLa 1118..1152 CDD:238060
LDLa 1157..1189 CDD:197566
LDLa 1198..1232 CDD:238060
LDLa 1243..1279 CDD:238060
LDLa 1283..1318 CDD:238060
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:464251
EGF_CA 1418..1452 CDD:214542
Blue background indicates that the domain is not in the aligned region.

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