| Sequence 1: | NP_612113.2 | Gene: | cue / 38174 | FlyBaseID: | FBgn0011204 | Length: | 644 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_037287.2 | Gene: | Vldlr / 25696 | RGDID: | 3963 | Length: | 873 | Species: | Rattus norvegicus |
| Alignment Length: | 506 | Identity: | 98/506 - (19%) |
|---|---|---|---|
| Similarity: | 168/506 - (33%) | Gaps: | 181/506 - (35%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 63 ALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAEQTIARTGNESVGGLAYDPLNMNLFWSD 127
Fly 128 TEQRKIFFAPIHGSATPQVLVDLSAEGGRPDGVAVDVCRRKLYWTNSNVTHPT-VERINLDGSNR 191
Fly 192 TVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVVLKDKHH--EPLNLAVT 254
Fly 255 NDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFKDPEPVAEDCPLVRVANLSEEAR 319
Fly 320 GIVARTGFYQRLQKDHHCASIVRKVKERVDEQSRKFEIRSLLDQKIKVLEDERCMNDGEYRAATD 384
Fly 385 LCICPTGFKGSRCEIRECHNYCVHGTCQMSELAYPKCYCQPGFKGERCELSVCSGLCLNGGHCRV 449
Fly 450 SKDENEAPSCECPAKF----GGARCEQNSTEICSLFCRLLKHEPEMYVPFGCHSICEELAQDNST 510
Fly 511 NI-----AIPQYQHL-----EVCLTPR----VWTSSVIIILVVGIVSSLLL 547 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| cue | NP_612113.2 | LY | 101..141 | CDD:214531 | 8/39 (21%) |
| Ldl_recept_b | 167..208 | CDD:278487 | 11/41 (27%) | ||
| LY | 193..237 | CDD:214531 | 13/43 (30%) | ||
| Vldlr | NP_037287.2 | LDLa | 33..67 | CDD:238060 | |
| LDLa | 71..103 | CDD:197566 | |||
| Ldl_recept_a | 111..149 | CDD:395011 | |||
| Ldl_recept_a | 153..188 | CDD:395011 | |||
| LDLa | 192..224 | CDD:197566 | |||
| Ldl_recept_a | 237..273 | CDD:395011 | |||
| Ldl_recept_a | 276..312 | CDD:395011 | |||
| Ldl_recept_a | 320..350 | CDD:395011 | |||
| FXa_inhibition | 360..394 | CDD:405372 | |||
| EGF_CA | 396..426 | CDD:214542 | |||
| LDL-receptor class B 1 | 439..480 | 3/6 (50%) | |||
| LY | 461..499 | CDD:214531 | 8/27 (30%) | ||
| LDL-receptor class B 2 | 481..524 | 11/48 (23%) | |||
| Ldl_recept_b | 481..521 | CDD:395012 | 10/45 (22%) | ||
| LY | 508..547 | CDD:214531 | 9/40 (23%) | ||
| LDL-receptor class B 3 | 525..567 | 9/44 (20%) | |||
| LDL-receptor class B 4 | 568..611 | 12/44 (27%) | |||
| Ldl_recept_b | 568..608 | CDD:395012 | 11/41 (27%) | ||
| LY | 592..634 | CDD:214531 | 13/44 (30%) | ||
| LDL-receptor class B 5 | 612..654 | 16/44 (36%) | |||
| LDL-receptor class B 6 | 655..697 | 14/74 (19%) | |||
| Ldl_recept_b | 655..694 | CDD:395012 | 13/71 (18%) | ||
| FXa_inhibition | 706..749 | CDD:405372 | 11/50 (22%) | ||
| Clustered O-linked oligosaccharides | 751..790 | 10/60 (17%) | |||
| Endocytosis signal. /evidence=ECO:0000255 | 832..837 | ||||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_KOG1215 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.810 | |||||