DRSC/TRiP Functional Genomics Resources

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Protein Alignment cue and egg-2

DIOPT Version :10

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_498537.1 Gene:egg-2 / 187510 WormBaseID:WBGene00019811 Length:548 Species:Caenorhabditis elegans


Alignment Length:227 Identity:47/227 - (20%)
Similarity:78/227 - (34%) Gaps:71/227 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 CASIVRKVKERVDEQSRKFEIRSLLDQKIKVLEDERCMN-----DGEYRAA-------------- 382
            |.||. ..:..::|:|.|.:..|:|...|.:..::.|..     ||...|:              
 Worm   162 CQSIY-SCRAHIEEESEKKDKTSVLPTLICLTAEKLCNGVENCPDGSDEASCRSKCSKDQFKCSG 225

  Fly   383 TDLCICPTGFKGSRCE-IRECHNYCVHGTCQMSELAYPKCYCQPGFKGERC--ELSVCSGLCLNG 444
            :|.|: |...|   |: :.:|.|......|...:....||       |:.|  ...||.|:    
 Worm   226 SDACL-PISVK---CDGVSDCENESDESNCNKCQKGAHKC-------GKNCIKASKVCDGI---- 275

  Fly   445 GHCRVSKDENEAPSCECPAKFGG--ARCEQNSTEICSLFCRLLKHEPEMYVPFGCHSICEELAQD 507
            ..|....||::   |:|....|.  |.||..:..:.|..|.            |.|...:.:.::
 Worm   276 PDCDDGSDEHQ---CDCKTCSGSEKALCEDGTCIMRSQVCD------------GKHDCLDGIDEE 325

  Fly   508 N----------STNIAI------PQYQHLEVC 523
            |          |:.:.:      .||..:|.|
 Worm   326 NCPGSCSNERFSSKLKLLTCDDGNQYSEVEAC 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 TerD_like 48..>85 CDD:473128
YvrE <73..>164 CDD:442613
LY 101..141 CDD:214531
Ldl_recept_b 167..208 CDD:459654
LY 193..237 CDD:214531
egg-2NP_498537.1 LDLa 123..159 CDD:238060
LDLa 216..251 CDD:238060 7/38 (18%)
LDLa 254..287 CDD:238060 10/46 (22%)
LDLa 300..327 CDD:238060 6/38 (16%)
LDLa 373..411 CDD:238060
LDLa 424..453 CDD:238060
LDLa 456..491 CDD:238060
Blue background indicates that the domain is not in the aligned region.

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