DRSC/TRiP Functional Genomics Resources

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Protein Alignment cue and rme-2

DIOPT Version :10

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_500815.2 Gene:rme-2 / 177329 WormBaseID:WBGene00004374 Length:925 Species:Caenorhabditis elegans


Alignment Length:502 Identity:103/502 - (20%)
Similarity:181/502 - (36%) Gaps:153/502 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 DLKHRNGSIFSLKRDLIAANH--------VAEQTIARTGNESVGG---LAYDPLNMNLFW---SD 127
            |..|||..:|.    .|:..|        |::..:.|...|:|.|   :|.|.:..|:|:   |.
 Worm   428 DFMHRNNKMFM----SISDEHGDPTGELSVSDNGLMRVLRENVIGVSNVAVDWIGGNVFFTQKSP 488

  Fly   128 TEQRKIFFAPIHGSATPQVLVDLSAEGGRPDGVAVDVCRRKLYWTNSNVTHPTVERINLDGSNRT 192
            :....|....:.|....:| ::...:|....|:.|...|..:.|.:|...:..:...|:|||...
 Worm   489 SPSAGISICTMSGMFCRRV-IEGKEQGQSYRGLVVHPMRGLIIWIDSYQKYHRIMMANMDGSQVR 552

  Fly   193 VIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVVLKDKHHEPLNLAVTNDA 257
            :::.:.:::|..:.:|.:...:::.|..:.:   :|...:|..:|:||:.:..|.|.::|..|..
 Worm   553 ILLDNKLEVPSALAIDYIRHDVYFGDVERQL---IERVNIDTKERRVVISNGVHHPYDMAYFNGF 614

  Fly   258 IYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFKDPEPVAEDCPLVRVANLSEEARGIV 322
            :||.|      |....:.|.::|.                     ....|.| :...:....||.
 Worm   615 LYWAD------WGSESLKVQEMTH---------------------HHSSPQV-IHTFNRYPYGIA 651

  Fly   323 ARTGFYQRLQKDHHCASIVRKVKERVDEQSRKFEIRSLLDQKIKVLEDERCMNDGEYRAATDLCI 387
            .....||.....:.|..:               |...|.   :.|.:.:..|        |..|:
 Worm   652 VNHSLYQTGPPSNPCLEL---------------ECPWLC---VIVPKSDFIM--------TAKCV 690

  Fly   388 CPTGFKGSRCEIRECHNYCV---------------H-GTCQMSELAYPKCYCQPGFKGERCELSV 436
            ||.|:..|..|     |.|:               | |:..|:|      ||:.|.         
 Worm   691 CPDGYTHSVTE-----NSCIPPVTIEDEENLEKLSHIGSALMAE------YCEAGV--------- 735

  Fly   437 CSGLCLNGGHCRVSKDENEAPS---CECPAKFGGARCEQNSTEICSLFCRLLKHEPEMYVPFGCH 498
               .|:|||.||..::|:....   |:|...:.|..||           ||   .||.:      
 Worm   736 ---ACMNGGACRELQNEHGRAHRIVCDCEGPYDGQYCE-----------RL---NPEKF------ 777

  Fly   499 SICEELAQDNSTNIAIPQYQHLEVCLTPRVWTSSVIIILVVGIVSSL 545
            |..||  :|:|..:.:             :....:||:.||||::.|
 Worm   778 SAMEE--EDSSLWLIV-------------LLLIFLIIVAVVGIIAFL 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 TerD_like 48..>85 CDD:473128 4/7 (57%)
YvrE <73..>164 CDD:442613 23/100 (23%)
LY 101..141 CDD:214531 10/45 (22%)
Ldl_recept_b 167..208 CDD:459654 7/40 (18%)
LY 193..237 CDD:214531 5/43 (12%)
rme-2NP_500815.2 LDLa 37..69 CDD:238060
LDLa 75..109 CDD:238060
LDLa 137..171 CDD:238060
FXa_inhibition 309..337 CDD:464251
vWFA <337..375 CDD:469594
Ldl_recept_b 527..569 CDD:459654 7/41 (17%)
LY 552..594 CDD:214531 5/44 (11%)
LY 595..634 CDD:214531 12/65 (18%)
Blue background indicates that the domain is not in the aligned region.

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