DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cue and Dgcr2

DIOPT Version :9

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_034178.2 Gene:Dgcr2 / 13356 MGIID:892866 Length:549 Species:Mus musculus


Alignment Length:132 Identity:30/132 - (22%)
Similarity:51/132 - (38%) Gaps:44/132 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   470 CEQNSTEICS---------------------------LFCRLLKHEPEMYVPFGCH--SICEELA 505
            |.:.|:.:|.                           |.|...:.||||.|...|.  ..|::..
Mouse   256 CSEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHRGEPEMCVAALCERPQGCQQYR 320

  Fly   506 QDNSTNIAIPQYQHLEVCLTPRVWTSSVI------IILVVGIVSSLLLVAVIVQGIRRLYKPKRP 564
            :|       |:.....:||.|.  .||:.      :.|||..:||.|::::::..:.||.:.:|.
Mouse   321 KD-------PKECCKFMCLDPD--GSSLFDSMASGMRLVVSCISSFLILSLLLFMVHRLRQRRRE 376

  Fly   565 RI 566
            ||
Mouse   377 RI 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 LY 101..141 CDD:214531
Ldl_recept_b 167..208 CDD:278487
LY 193..237 CDD:214531
Dgcr2NP_034178.2 LDLa 30..66 CDD:238060
CLECT_DGCR2_like 114..266 CDD:153069 3/9 (33%)
VWC 270..328 CDD:214564 11/64 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 416..549
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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