DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cue and lrp2b

DIOPT Version :9

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_021335953.1 Gene:lrp2b / 101886177 ZFINID:ZDB-GENE-111115-1 Length:4577 Species:Danio rerio


Alignment Length:630 Identity:132/630 - (20%)
Similarity:200/630 - (31%) Gaps:223/630 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FGMDVLLVLL----LATCLLTPA-HGTP------------LEWDFA---------VTL-RTKIQF 43
            ||:|..|:..    :::..|.|. |..|            :|:||.         |.| |:||.:
Zfish  2352 FGLDEYLIFTTDYSVSSMRLDPEDHSVPFPTFNMGYGVLAIEFDFQDKRVFFTQYVGLGRSKIGY 2416

  Fly    44 M--DSSWQTIATAAHEFDELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAEQTIART 106
            :  .||.....|.|.:.|:...|.:|...:.:||.|..                           
Zfish  2417 IITTSSTSPPVTIASDLDDPEGLAYDWVHKRLYFTDYY--------------------------- 2454

  Fly   107 GNESVGGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLVDLSAEGGRPDGVAVDVCRRKLYW 171
             |.||..:..|..|.:|.                           |.|.||..:.||.|...|||
Zfish  2455 -NRSVQSMGIDGQNRSLI---------------------------AHGDRPRAIVVDPCYGYLYW 2491

  Fly   172 TNSNVTHPTVERINLDGSNRTVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSD 236
            |:.. :...:||..|.|:.|..:|::::..|..:.:|.....|:|.|   .....:|.|.|.|.:
Zfish  2492 TDWG-SPAKIERATLGGNFRIPVINTSLSQPNALSLDYEERLLYWAD---STLDKIERSSLTGEN 2552

  Fly   237 RQVVLKDKHHEPLNLAVTNDAIYWTDRTTRAVWSHPK-----VPVIKVTTTSKPDE--------E 288
            |:|:|....: |..|.|....|||||..||.|:...|     :.::......:|::        :
Zfish  2553 REVILTQTQY-PFALTVFQQDIYWTDWNTRIVYRASKDDGSGLTIMATDLQYRPNDIHVFSASRQ 2616

  Fly   289 DSTDS---------TDFKDPEPVAEDCPLVRVAN--LSEEARGIVARTGFYQRLQKDH------H 336
            :|..|         :....|.|...:|......|  |:.|.:..:...|  ||...|.      .
Zfish  2617 ESCSSPCQLFNGGCSHVCVPGPAGPECQCPSTGNWYLANEGKDCIPDNG--QRCHADQFTCLDGR 2679

  Fly   337 CASI------VRKVKERVDEQSRKFEIRSLLDQKIKVLEDERCM--------------NDGEYRA 381
            |.|.      .|...:..||..|.....:....:. ..::..|:              |..|:..
Zfish  2680 CLSQNFKCDGYRDCLDGSDELERVCAFHTCSPTEF-TCDNGGCVPLYYVCDYTNDCGDNSDEHGC 2743

  Fly   382 ATDLCICPTGF--KGSRC--------EIRECHNYCVHGTCQMSELAYPKCYCQPGFKGERCE-LS 435
            ....|...|.|  ...||        .|.:|.:   :||  ..|:..|...|.||.  .:|: .:
Zfish  2744 PFPTCNPSTEFTCANGRCISAAYVCDGINDCRD---NGT--TDEVNCPDRTCAPGL--VKCDTTN 2801

  Fly   436 VC---SGLCLNGGHCRVSKDEN---------------------------------------EAPS 458
            :|   |.||....:|..:.|||                                       |.|:
Zfish  2802 ICIPSSSLCDGHNNCGDNSDENPLFCAGRTCSADEFRCDSGKCIPQFWVCDRISDCLDGTDEPPT 2866

  Fly   459 CE-----C-PAKF---------------GGARCEQNSTEICSLFC 482
            ||     | |.:|               |...|..||.|...|.|
Zfish  2867 CEDHIYTCSPQQFNCANGNCIQQSWVCDGNNDCGDNSDEAQELQC 2911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 LY 101..141 CDD:214531 6/39 (15%)
Ldl_recept_b 167..208 CDD:278487 11/40 (28%)
LY 193..237 CDD:214531 10/43 (23%)
lrp2bXP_021335953.1 LDLa 2..34 CDD:238060
LDLa 38..71 CDD:197566
LDLa 80..114 CDD:238060
LDLa 123..151 CDD:238060
LDLa 155..189 CDD:238060
LDLa 194..228 CDD:238060
LDLa 235..269 CDD:238060
FXa_inhibition 324..>347 CDD:317114
LY 429..469 CDD:214531
LY 471..516 CDD:214531
LY 519..559 CDD:214531
FXa_inhibition 631..672 CDD:317114
Ldl_recept_b 808..848 CDD:278487
LY 834..874 CDD:214531
FXa_inhibition 950..982 CDD:317114
LDLa 995..1029 CDD:238060
LDLa 1036..1070 CDD:238060
LDLa 1078..1112 CDD:238060
LDLa 1119..1153 CDD:238060
LDLa 1157..1192 CDD:238060
LDLa 1200..1234 CDD:238060
LDLa 1241..1275 CDD:238060
LDLa 1282..1314 CDD:197566
FXa_inhibition 1323..1358 CDD:317114
EGF_CA 1360..1398 CDD:214542
YncE 1388..>1660 CDD:331368
LY 1470..1512 CDD:214531
Ldl_recept_b 1535..1575 CDD:278487
LY 1559..1601 CDD:214531
LY 1789..1824 CDD:214531
LY 1837..1879 CDD:214531
LY 1922..1958 CDD:214531
FXa_inhibition 1991..2027 CDD:317114
Ldl_recept_b 2170..2210 CDD:278487
LY 2195..2236 CDD:214531
LY 2427..2468 CDD:214531 12/68 (18%)
LY 2468..2510 CDD:214531 16/69 (23%)
LY 2513..2553 CDD:214531 10/42 (24%)
FXa_inhibition 2623..2660 CDD:317114 6/36 (17%)
LDLa 2667..2699 CDD:197566 5/31 (16%)
LDLa 2709..2743 CDD:238060 3/34 (9%)
LDLa 2750..2785 CDD:238060 9/39 (23%)
LDLa 2789..2822 CDD:197566 9/34 (26%)
LDLa 2831..2863 CDD:197566 0/31 (0%)
LDLa 2873..2905 CDD:197566 7/31 (23%)
LDLa 2915..2952 CDD:197566
LDLa 2961..2995 CDD:238060
LDLa 2999..3031 CDD:197566
Ldl_recept_a 3042..3077 CDD:278486
cEGF 3100..3123 CDD:315355
vWFA <3115..3158 CDD:320736
LY 3189..3229 CDD:214531
LY 3230..3272 CDD:214531
Ldl_recept_b 3303..3341 CDD:278487
LY 3327..3367 CDD:214531
LY 3374..3409 CDD:214531
LDLa 3480..3512 CDD:197566
LDLa 3521..3552 CDD:197566
LDLa 3561..3593 CDD:197566
LDLa 3602..3634 CDD:197566
LDLa 3646..3682 CDD:238060
LDLa 3689..3722 CDD:238060
LDLa 3727..3761 CDD:238060
LDLa 3766..3800 CDD:238060
LDLa 3810..3841 CDD:197566
LDLa 3854..3883 CDD:197566
LDLa 3896..3930 CDD:238060
EGF_CA 3975..4014 CDD:214542
LY 4107..4142 CDD:214531
LY 4143..4186 CDD:214531
LY 4187..4230 CDD:214531
FXa_inhibition 4306..>4324 CDD:317114
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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