DRSC/TRiP Functional Genomics Resources

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Protein Alignment cue and lrp2b

DIOPT Version :10

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:XP_021335953.2 Gene:lrp2b / 101886177 ZFINID:ZDB-GENE-111115-1 Length:4602 Species:Danio rerio


Alignment Length:630 Identity:132/630 - (20%)
Similarity:200/630 - (31%) Gaps:223/630 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FGMDVLLVLL----LATCLLTPA-HGTP------------LEWDFA---------VTL-RTKIQF 43
            ||:|..|:..    :::..|.|. |..|            :|:||.         |.| |:||.:
Zfish  2377 FGLDEYLIFTTDYSVSSMRLDPEDHSVPFPTFNMGYGVLAIEFDFQDKRVFFTQYVGLGRSKIGY 2441

  Fly    44 M--DSSWQTIATAAHEFDELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAEQTIART 106
            :  .||.....|.|.:.|:...|.:|...:.:||.|..                           
Zfish  2442 IITTSSTSPPVTIASDLDDPEGLAYDWVHKRLYFTDYY--------------------------- 2479

  Fly   107 GNESVGGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLVDLSAEGGRPDGVAVDVCRRKLYW 171
             |.||..:..|..|.:|.                           |.|.||..:.||.|...|||
Zfish  2480 -NRSVQSMGIDGQNRSLI---------------------------AHGDRPRAIVVDPCYGYLYW 2516

  Fly   172 TNSNVTHPTVERINLDGSNRTVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSD 236
            |:.. :...:||..|.|:.|..:|::::..|..:.:|.....|:|.|   .....:|.|.|.|.:
Zfish  2517 TDWG-SPAKIERATLGGNFRIPVINTSLSQPNALSLDYEERLLYWAD---STLDKIERSSLTGEN 2577

  Fly   237 RQVVLKDKHHEPLNLAVTNDAIYWTDRTTRAVWSHPK-----VPVIKVTTTSKPDE--------E 288
            |:|:|....: |..|.|....|||||..||.|:...|     :.::......:|::        :
Zfish  2578 REVILTQTQY-PFALTVFQQDIYWTDWNTRIVYRASKDDGSGLTIMATDLQYRPNDIHVFSASRQ 2641

  Fly   289 DSTDS---------TDFKDPEPVAEDCPLVRVAN--LSEEARGIVARTGFYQRLQKDH------H 336
            :|..|         :....|.|...:|......|  |:.|.:..:...|  ||...|.      .
Zfish  2642 ESCSSPCQLFNGGCSHVCVPGPAGPECQCPSTGNWYLANEGKDCIPDNG--QRCHADQFTCLDGR 2704

  Fly   337 CASI------VRKVKERVDEQSRKFEIRSLLDQKIKVLEDERCM--------------NDGEYRA 381
            |.|.      .|...:..||..|.....:....:. ..::..|:              |..|:..
Zfish  2705 CLSQNFKCDGYRDCLDGSDELERVCAFHTCSPTEF-TCDNGGCVPLYYVCDYTNDCGDNSDEHGC 2768

  Fly   382 ATDLCICPTGF--KGSRC--------EIRECHNYCVHGTCQMSELAYPKCYCQPGFKGERCE-LS 435
            ....|...|.|  ...||        .|.:|.:   :||  ..|:..|...|.||.  .:|: .:
Zfish  2769 PFPTCNPSTEFTCANGRCISAAYVCDGINDCRD---NGT--TDEVNCPDRTCAPGL--VKCDTTN 2826

  Fly   436 VC---SGLCLNGGHCRVSKDEN---------------------------------------EAPS 458
            :|   |.||....:|..:.|||                                       |.|:
Zfish  2827 ICIPSSSLCDGHNNCGDNSDENPLFCAGRTCSADEFRCDSGKCIPQFWVCDRISDCLDGTDEPPT 2891

  Fly   459 CE-----C-PAKF---------------GGARCEQNSTEICSLFC 482
            ||     | |.:|               |...|..||.|...|.|
Zfish  2892 CEDHIYTCSPQQFNCANGNCIQQSWVCDGNNDCGDNSDEAQELQC 2936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 TerD_like 48..>85 CDD:473128 8/36 (22%)
YvrE <73..>164 CDD:442613 14/90 (16%)
LY 101..141 CDD:214531 6/39 (15%)
Ldl_recept_b 167..208 CDD:459654 11/40 (28%)
LY 193..237 CDD:214531 10/43 (23%)
lrp2bXP_021335953.2 LDLa 25..59 CDD:238060
LDLa 63..96 CDD:197566
LDLa 105..139 CDD:238060
LDLa 148..176 CDD:238060
LDLa 180..214 CDD:238060
LDLa 219..253 CDD:238060
LDLa 260..294 CDD:238060
FXa_inhibition 349..374 CDD:464251
Ldl_recept_b 429..469 CDD:459654
LY 454..494 CDD:214531
LY 496..541 CDD:214531
LY 544..584 CDD:214531
FXa_inhibition 656..697 CDD:464251
YncE 724..942 CDD:442618
Ldl_recept_b 833..874 CDD:459654
LY 859..899 CDD:214531
LDLa 1020..1054 CDD:238060
LDLa 1061..1095 CDD:238060
LDLa 1103..1137 CDD:238060
LDLa 1144..1178 CDD:238060
LDLa 1182..1217 CDD:238060
LDLa 1225..1259 CDD:238060
LDLa 1266..1300 CDD:238060
LDLa 1307..1339 CDD:197566
FXa_inhibition 1348..1383 CDD:464251
EGF_CA 1385..1423 CDD:214542
Ldl_recept_b 1473..1512 CDD:459654
LY 1495..1537 CDD:214531
Ldl_recept_b 1560..1601 CDD:459654
LY 1584..1626 CDD:214531
FXa_inhibition 1700..1734 CDD:464251
LY 1814..1849 CDD:214531
LY 1862..1904 CDD:214531
LY 1947..1983 CDD:214531
FXa_inhibition 2016..2052 CDD:464251
Vgb <2100..2286 CDD:443399
Ldl_recept_b 2195..2236 CDD:459654
LY 2220..2261 CDD:214531
YncE <2431..2562 CDD:442618 42/186 (23%)
LY 2538..2578 CDD:214531 10/42 (24%)
Ldl_recept_b 2598..2636 CDD:459654 10/37 (27%)
FXa_inhibition 2648..2685 CDD:464251 6/36 (17%)
LDLa 2692..2724 CDD:197566 5/31 (16%)
LDLa 2734..2768 CDD:238060 3/34 (9%)
LDLa 2775..2810 CDD:238060 9/39 (23%)
LDLa 2814..2847 CDD:197566 9/34 (26%)
LDLa 2856..2888 CDD:197566 0/31 (0%)
LDLa 2898..2930 CDD:197566 7/31 (23%)
LDLa 2940..2977 CDD:197566
LDLa 2986..3020 CDD:238060
LDLa 3024..3056 CDD:197566
Ldl_recept_a 3067..3102 CDD:395011
FXa_inhibition 3115..3143 CDD:464251
vWFA <3140..3183 CDD:469594
LY 3214..3254 CDD:214531
LY 3255..3297 CDD:214531
Ldl_recept_b 3328..3367 CDD:459654
LY 3352..3392 CDD:214531
LY 3399..3434 CDD:214531
LDLa 3505..3537 CDD:197566
LDLa 3546..3577 CDD:197566
LDLa 3586..3618 CDD:197566
LDLa 3627..3659 CDD:197566
LDLa 3671..3707 CDD:238060
LDLa 3714..3747 CDD:238060
LDLa 3752..3786 CDD:238060
LDLa 3791..3825 CDD:238060
LDLa 3835..3866 CDD:197566
LDLa 3879..3908 CDD:197566
LDLa 3921..3955 CDD:238060
EGF_CA 4000..4039 CDD:214542
LY 4132..4167 CDD:214531
LY 4168..4211 CDD:214531
LY 4212..4255 CDD:214531
FXa_inhibition 4329..>4349 CDD:464251
Blue background indicates that the domain is not in the aligned region.

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