DRSC/TRiP Functional Genomics Resources

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Protein Alignment cue and egf

DIOPT Version :9

Sequence 1:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster
Sequence 2:NP_001106478.1 Gene:egf / 100127663 XenbaseID:XB-GENE-951823 Length:1051 Species:Xenopus tropicalis


Alignment Length:590 Identity:134/590 - (22%)
Similarity:232/590 - (39%) Gaps:171/590 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 KIQFMDSSWQTIATAAHEFDELSALTFDESEELIYF--NDLK-----HRNGSIFSLKRDLIAANH 97
            :|.|..::::::..:  :...:.||.:|..|:.:||  ..||     :.:||.   ::.:|:.: 
 Frog   499 RINFDGTNYESVLDS--QIGRVFALDYDPVEDRMYFAHTALKCIESANMDGSD---RKKMISGD- 557

  Fly    98 VAEQTIARTGNESVGGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLVDLSAEGGRPDGVAV 162
                      ..::.||..|.:|..|:|:|..:..|..:.::|.....::.:.:.:   |.|:.|
 Frog   558 ----------LSTLEGLTVDAINRKLYWTDRGKSCIERSDLNGKYRKILIQENNIQ---PRGICV 609

  Fly   163 DVCRRKLYWTNSNVTHPTVERINLDGSNRTVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSV 227
            ....:||:||:.. .:|.:|..:|:||.|.||||.::..|.||.||.|:|.::|.|..|.|   :
 Frog   610 HPLAKKLFWTHVG-ANPRIESSDLEGSEREVIISKDLIWPSGITVDHLTDVIYWCDAKKSV---I 670

  Fly   228 ESSKLDGSDRQVVLKDKHHEPLNLAVTNDAIYWTD-------------------------RTTRA 267
            ||:.||||:||...::....|..::|..|.::.:|                         |.:..
 Frog   671 ESANLDGSNRQSFSQNDVGHPFAISVFEDHLWVSDWVQPSLIRIEKRNTQNWVRLRGNMQRPSSV 735

  Fly   268 VWSHPKV-PVIKVTTTSKPDEEDSTDSTDFKD---PEPVA--------EDCPLVRVANLSE---- 316
            |..||.. |||.........|:||.:.|...:   |.|::        .:.|..|...|:|    
 Frog   736 VIVHPLAKPVIADDIPLPRKEKDSNNQTAHSESFFPGPLSTSNAEMGTREAPSSRNGLLAEIMVS 800

  Fly   317 EARGIVARTGFYQRLQKDHHCASIVRKVKER--------------------VDEQSRKFEIRSLL 361
            :..|.:           |.||......|...                    :||.|  ..|.:..
 Frog   801 DDSGCI-----------DIHCDINAHCVSSEDGPKCQCLEGFTGNGRLCHDIDECS--LHIAACN 852

  Fly   362 DQKIKVLEDERCMNDGEYRAATDLCICPTGF--KGSRC-EIREC----HNYCVHGTCQMSELAYP 419
            ..:.:.::.|     |.|     :|.|..|:  .|.:| :|.||    |....:..|..:|..| 
 Frog   853 PHQTECIDTE-----GGY-----ICKCKYGYIGNGLQCTDIDECSRGTHTCGENAVCTNTEGNY- 906

  Fly   420 KCYCQPGFKG-----------ERCELSVCSGLCLNGGHCRVSKDENEAPSCECPAKFGGARCEQN 473
            .|.|..||.|           ..|.|:. .|.|||||.| :...|.:...|.|.|.:.|.||:.:
 Frog   907 TCTCTNGFPGSAADCTGKTIIRECPLAY-DGYCLNGGVC-IHFPELKDYGCRCVAGYVGERCQFD 969

  Fly   474 STEICSLFCRLLKHEPEMYVPFGCHSICEELAQDNSTNIAIPQYQHLEVCLTPRVWTSSVIIILV 538
            ..:...      ||..:|.:    |::          .||:                |.::::|:
 Frog   970 DLKSWE------KHVTQMKI----HNV----------TIAV----------------SLLLLLLI 998

  Fly   539 VGIVS 543
            :|:.|
 Frog   999 LGLGS 1003

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cueNP_612113.2 LY 101..141 CDD:214531 8/39 (21%)
Ldl_recept_b 167..208 CDD:278487 17/40 (43%)
LY 193..237 CDD:214531 21/43 (49%)
egfNP_001106478.1 LY 152..194 CDD:214531
vWFA <346..398 CDD:320736
FXa_inhibition 412..440 CDD:317114
FXa_inhibition 447..480 CDD:317114
LY 508..550 CDD:214531 10/46 (22%)
LY 554..593 CDD:214531 10/49 (20%)
Ldl_recept_b 615..654 CDD:278487 17/39 (44%)
LY 638..680 CDD:214531 21/44 (48%)
EGF_3 810..838 CDD:315598 2/27 (7%)
EGF_3 851..880 CDD:315598 7/38 (18%)
EGF_3 886..>914 CDD:315598 7/28 (25%)
PHA02887 <927..>967 CDD:333467 15/41 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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