Protein Alignment hfp and shep

DIOPT Version :9

• Sequence 1: NP_525123.2
• Gene: hfp / 38173
• FlyBaseID: FBgn0028577
• Length: 637
• Species: Drosophila melanogaster
• Sequence 2: NP_001246636.1
• Gene: shep / 38605
• FlyBaseID: FBgn0052423
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 463
• Identity: 98/463 - (21%)
• Similarity: 159/463 - (34%)
• Gaps: 144/463 - (31%)

  Fly    28 TRSDSGKSTDSKIPYLSQPLYDLKQTGDVKFGPGTRSALLGLLGGALPKLSSEQHDLVSKAKKYA 92
            |.|.|..:|.|:...||..|.:...| :...||          .|.:...:.:..:.:||...|
  Fly   194 TNSSSSSNTGSQSGTLSTSLSNTTNT-NTNMGP----------NGTVQNQNQQGGEQLSKTNLY- 246

  Fly    93 MEQSIKMVLMKQTLAHQQQQLATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIK 157
                          ....||..|.:..|.       ||..|                    |.|.
  Fly   247 --------------IRGLQQGTTDKDLVN-------MCAQY--------------------GTII 270

  Fly   158 SINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEE 222
            |.....|..|.|.||:.||::|.|..|:.|::.:.|..:              |||....:.|:.
  Fly   271 STKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGV--------------QAQMAKQQEQDP 321

  Fly   223 AKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287
                ..:|:|::.|...|.|::::...:|.::..::.:...::: ||.||....:::..::.|..
  Fly   322 ----TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNS-KGVGFARMESREKCEQIIQM 381

  Fly   288 MN-------------LFDLGGQLLRVGRSITPPNALACPTTNSTMPTAAAVAAAAATAKIQALDA 339
            .|             .|..||...:        |....|.     |.|.|....:|.....|.|.
  Fly   382 FNGNTIPGAKDPLLVKFADGGPKKK--------NLFKTPD-----PNARAWRDVSAEGIPVAYDP 433

  Fly   340 VASNAVLGLSQNTPVMAAGAVVTK-----VGAMPV-------------VSAATSAAALHPALAQA 386
            ......:.::..||:   |...::     ||..||             |...||.:..:..:|.|
  Fly   434 TMQQNGVSVNVGTPI---GVPYSRFSAPQVGGYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAA 495

  Fly   387 AP----ALLPPGIFQAPTPVAPSLL-----GVPAG-----LQPLQA----VVPT----LPPPALL 429
            .|    :..|..:.|. .|...|::     |||.|     |..||.    :.||    .|||.::
  Fly   496 PPLGVTSYKPEAVNQV-QPRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPPTII 559

  Fly   430 ATPTLPMT 437
              ||:|||
  Fly   560 --PTMPMT 565

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
hfp	NP_525123.2	half-pint	10..637	CDD:130706	98/463 (21%)
		RRM1_PUF60	130..205	CDD:240816	17/74 (23%)
		RRM2_PUF60	227..303	CDD:240817	15/88 (17%)
		RRM3_UHM_PUF60	536..636	CDD:241092
shep	NP_001246636.1	RRM1_MSSP	243..313	CDD:240689	25/125 (20%)
		RRM2_MSSP	322..400	CDD:240690	13/78 (17%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439563
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930