DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hfp and puf60

DIOPT Version :9

Sequence 1:NP_525123.2 Gene:hfp / 38173 FlyBaseID:FBgn0028577 Length:637 Species:Drosophila melanogaster
Sequence 2:XP_031759079.1 Gene:puf60 / 100145091 XenbaseID:XB-GENE-5785623 Length:529 Species:Xenopus tropicalis


Alignment Length:590 Identity:305/590 - (51%)
Similarity:371/590 - (62%) Gaps:99/590 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 SALLGLLGGALPKLSSEQHDLVSKAKKYAMEQSIKMVLMKQTLAHQQQQLAT------------- 115
            ||.||     ||.|:.||.:.:.||||||||||||.||:|||:|||.|||..             
 Frog    21 SAKLG-----LPPLTLEQQEALQKAKKYAMEQSIKSVLVKQTIAHQHQQLTNLQMAAVTMSFGDP 80

  Fly   116 ----QRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFV 176
                |....|||:|||:|||||||||.:||.|||||.||.||||||||:||||.:|.||||||||
 Frog    81 LSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFV 145

  Fly   177 EYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEE 241
            |||:||.|||||||||..::||||||||||||:.|||.:||::.|||:|||||||||:|.|||:|
 Frog   146 EYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARSFNRIYVASVHQDLSDE 210

  Fly   242 DIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITP 306
            ||||||||||.|..|.||:..:...|||||||||...|:..:|::||||||||||.||||:::||
 Frog   211 DIKSVFEAFGKIKSCMLARDPTTGKHKGYGFIEYEKGQSSQDAVSSMNLFDLGGQYLRVGKAVTP 275

  Fly   307 PNALACPTTNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVMAAGAVVTKVGAMPVVS 371
            |..|..|.|...:|.|||||||||||||.|.:|||..||||      .:|:..:||     |.::
 Frog   276 PMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLG------TLASPGLVT-----PALT 329

  Fly   372 AATSAAALHPALAQAAPALLPPGIFQAPTPVAPSLLGVPAGLQPLQAVVPTLPPPALLATPTLPM 436
            .|....|| |....||.|   ||:....|||.|.|   |..:.|:..|.|.|..|          
 Frog   330 LAQPLGAL-PQAVMAAQA---PGVITGVTPVRPPL---PVTIPPVGLVNPLLSSP---------- 377

  Fly   437 TVGGVGVGLVPTVATLAGAEASKGAAAAAALSAAANNAAVTAANLSENIKKAHEKQQEELQKKLM 501
                      ||:|.|                               .:||  ||::||:   |.
 Frog   378 ----------PTLAQL-------------------------------EVKK--EKEEEEI---LP 396

  Fly   502 DEGDVQTLQQQENMSIKGQSARQLVMQRLMRPVDSRVIILRNMVGPEDVDETLQEEIQEECSKFG 566
            :....:.|.:||:|||.|.|||.:|||:|||..:|.|::|||||.|.|:|:.|:.|:.|||.|||
 Frog   397 ESERPEMLSEQEHMSISGSSARHMVMQKLMRKQESTVMVLRNMVDPRDIDDDLEGEVTEECGKFG 461

  Fly   567 TVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVVAELYDQGIFD 631
            .|:||||:.|||.|.||   ||||||||||||..:|..:..:||:||:|.||:||||:|||..||
 Frog   462 AVNRVIIYQEKQGEEED---AEIIVKIFVEFSMSSETQKAIQALNGRWFAGRKVVAEVYDQERFD 523

  Fly   632 QGDLS 636
            ..|||
 Frog   524 NSDLS 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hfpNP_525123.2 half-pint 10..637 CDD:130706 305/590 (52%)
RRM1_PUF60 130..205 CDD:240816 59/74 (80%)
RRM2_PUF60 227..303 CDD:240817 51/75 (68%)
RRM3_UHM_PUF60 536..636 CDD:241092 59/99 (60%)
puf60XP_031759079.1 half-pint 10..529 CDD:130706 305/590 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 205 1.000 Domainoid score I2859
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H8614
Inparanoid 1 1.050 520 1.000 Inparanoid score I1243
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D438205at33208
OrthoFinder 1 1.000 - - FOG0005543
OrthoInspector 1 1.000 - - oto102581
Panther 1 1.100 - - LDO PTHR47330
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4280
SonicParanoid 1 1.000 - - X3961
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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