DRSC/TRiP Functional Genomics Resources

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Protein Alignment stet and Rhbdf2

DIOPT Version :10

Sequence 1:NP_788450.1 Gene:stet / 38169 FlyBaseID:FBgn0020248 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001100537.2 Gene:Rhbdf2 / 303690 RGDID:1309699 Length:825 Species:Rattus norvegicus


Alignment Length:209 Identity:48/209 - (22%)
Similarity:81/209 - (38%) Gaps:56/209 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 PDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGSTRIACIYFSGVLAGSLGTSIFD 326
            ||:.:.||..||   ||||.:|...:|..|:.....||.:.|..||:.|:....:.|:|.::||.
  Rat   620 PDQFYRIWLSLF---LHAGIVHCLVSVVFQMTILRDLEKLAGWHRISIIFILSGITGNLASAIFL 681

  Fly   327 PDVFLVGASGGVYALLAAHLANVLLNYHQMR---YGVIKLLHILVFVSFDFGFAIYARYAGDELQ 388
            |....||.:|..:.|||.....:..::..:.   .....|..|::|: |..|...:         
  Rat   682 PYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFFNLSAIVLFL-FICGLLPW--------- 736

  Fly   389 LGSSSEFLAIDQAETAGAVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGT------- 446
                              :..:||:.|.::|:.:....|.            :|..||       
  Rat   737 ------------------IDNIAHIFGFLSGMLLAFAFLP------------YITFGTSDRYRKQ 771

  Fly   447 ---YLALVVFAIAF 457
               .::|:|||..|
  Rat   772 ALILVSLLVFAGLF 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stetNP_788450.1 EF-hand_7 87..157 CDD:463900
Rhomboid 262..428 CDD:426384 39/168 (23%)
Rhbdf2NP_001100537.2 Rhomboid_SP 98..280 CDD:463639
Rhomboid 617..760 CDD:426384 40/182 (22%)
MFS 718..>808 CDD:475125 18/108 (17%)
Blue background indicates that the domain is not in the aligned region.

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