DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stet and rom-2

DIOPT Version :9

Sequence 1:NP_788450.1 Gene:stet / 38169 FlyBaseID:FBgn0020248 Length:485 Species:Drosophila melanogaster
Sequence 2:NP_001366679.1 Gene:rom-2 / 183564 WormBaseID:WBGene00004401 Length:348 Species:Caenorhabditis elegans


Alignment Length:377 Identity:109/377 - (28%)
Similarity:178/377 - (47%) Gaps:63/377 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 WKLLFDMFDPEGFGEISVEEFLEALKSPEF---LSQVPMNKRELLLE-RAKKAKLPTGPGYVTFQ 150
            |..:|..||.:..|.|..||..:.::...:   .....:.|..|.|| |..|.        |.|.
 Worm    19 WIRIFRAFDTDHDGLIQCEEMQKTIRDSTYSFGFDHYELQKMSLYLEMREGKP--------VDFA 75

  Fly   151 DFVNVMSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILPEERDRKYYAD- 214
            ||..:||       ||. .:|.||.              |||     .|:.:.|:.:....::: 
 Worm    76 DFCYLMS-------KCK-GYRLREY--------------LFR-----AALTVTPKNQRIHVFSEL 113

  Fly   215 -RYTCCPPPFFIILVTLVELGFFVYHSVVTGEAA-PRGPIPSDSMFIYRPDKRHEIWRFLFYMVL 277
             ||.|.|||.|:|.:::|:|.|::|:.|.:.|.. ..||||:.|..|.......|:||...|.::
 Worm   114 QRYKCVPPPIFLIFLSIVQLAFYLYYVVDSSEGVWLSGPIPTMSPLIVSQYHLPELWRLFTYCLI 178

  Fly   278 HAGWLHLGFNVAVQLVFGLPLEMVHGSTRIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALL 342
            :.|..|:.||:.:||..|:|||:|| ..||..:||.|||.||:.:...||.|||.|.:.|.::|:
 Worm   179 NVGIFHIIFNILIQLAIGVPLELVH-RWRIYILYFMGVLFGSILSLALDPTVFLCGGAAGSFSLI 242

  Fly   343 AAHLANVLLNYHQMRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAGAV 407
            |:|:..:..|:.:|.....:|..::||.:.|:..|:|.|:....           ||:      |
 Worm   243 ASHITTIATNFKEMENATCRLPILIVFAALDYVLAVYQRFFAPR-----------IDK------V 290

  Fly   408 SYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIAL---GTYLALVVFAIA 456
            |...||.|.:||:....::.:..:......:.:|::|   |.::|:.:..||
 Worm   291 SMYGHLGGLVAGILFTFILFRGSKPSRFYTVSFWVSLVLSGFFIAICITLIA 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stetNP_788450.1 EFh <75..115 CDD:298682 8/24 (33%)
EF-hand_7 91..156 CDD:290234 17/68 (25%)
Rhomboid 262..428 CDD:279958 53/165 (32%)
rom-2NP_001366679.1 EF-hand_7 21..82 CDD:404394 17/68 (25%)
Rhomboid 165..311 CDD:396315 53/163 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162538
Domainoid 1 1.000 49 1.000 Domainoid score I7948
eggNOG 1 0.900 - - E1_COG0705
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5174
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1253228at2759
OrthoFinder 1 1.000 - - FOG0000995
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45840
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.760

Return to query results.
Submit another query.