DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho and rho-4

DIOPT Version :9

Sequence 1:NP_001261255.1 Gene:rho / 38168 FlyBaseID:FBgn0004635 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_525084.1 Gene:rho-4 / 32109 FlyBaseID:FBgn0030318 Length:417 Species:Drosophila melanogaster


Alignment Length:367 Identity:122/367 - (33%)
Similarity:184/367 - (50%) Gaps:55/367 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MENLTQNVNETKVDLGQEKEKEASQEEEHAT---------AAKETII-----DIPAAC------- 44
            ||.:.  :|:|.....:::.|.....::|.:         ..||.|.     ||||..       
  Fly    55 MEEIP--LNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHELKELISDGYCRDIPAYIADQILKR 117

  Fly    45 SSSSNSSSYDTDCSTASSTCCTRQGEHIYMQREAI---------PATPLPESEDIGLL-KYVHRQ 99
            |...|....|.:...|.|.      .|.:|.|..:         |..||...|..|.. |.:...
  Fly   118 SDQDNDGHLDFEEFYAMSL------RHKWMVRNMLTRYCRYVVPPPKPLEGDEPDGAYEKQMSIC 176

  Fly   100 HWPWFILVISIIEIAIFAYD--------RYTMPAQNFGLPVPIPSDSVLVYRPDRRLQVWRFFSY 156
            ..|..:::.|||||.:|..|        .|   ....|.....|:.::.:|.|.:|.:.|||.||
  Fly   177 PPPLTMVLFSIIEIIMFLVDVIHFQDDPNY---QDRIGESTSGPAATLFIYNPYKRYEGWRFVSY 238

  Fly   157 MFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAGSLGTSVVDSEVFLVGASGGVY 221
            ||:|....||..|::||:|.||.||::|...|:|::|:|||.|||:|||:....:||.|||||||
  Fly   239 MFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGASGGVY 303

  Fly   222 ALLAAHLANITLNYAHMKSASTQLGSVVIFVSCDLGYALYTQYFDGSAFAKGPQVSYIAHLTGAL 286
            ||:.||:|.|.:||:.|:.|..||.:.::|...|||.::|....|     :..|:.|:|||:||:
  Fly   304 ALITAHIATIIMNYSEMEYAIVQLLAFLVFCFTDLGTSVYRHLTD-----QHDQIGYVAHLSGAV 363

  Fly   287 AGLTIGFLVLKNFGHREYEQLIWWLALGVYCAFTVFAIVFNL 328
            |||.:|..||:|...|.:|:::||:|:.||.|.....|:.::
  Fly   364 AGLLVGIGVLRNLEVRRWERILWWVAVIVYFALMTTGIIIHV 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rhoNP_001261255.1 Rhomboid 144..297 CDD:279958 72/152 (47%)
rho-4NP_525084.1 EFh_HEF <57..197 CDD:355006 32/147 (22%)
EFh 73..134 CDD:238008 12/60 (20%)
Rhomboid 226..374 CDD:396315 72/152 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 84 1.000 Domainoid score I2842
eggNOG 1 0.900 - - E1_COG0705
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D102232at50557
OrthoFinder 1 1.000 - - FOG0000995
OrthoInspector 1 1.000 - - mtm1037
orthoMCL 1 0.900 - - OOG6_107191
Panther 1 1.100 - - P PTHR45840
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X418
98.820

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