DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SA-2 and SCC3

DIOPT Version :9

Sequence 1:NP_612109.3 Gene:SA-2 / 38167 FlyBaseID:FBgn0043865 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_566119.1 Gene:SCC3 / 819410 AraportID:AT2G47980 Length:1098 Species:Arabidopsis thaliana


Alignment Length:1116 Identity:236/1116 - (21%)
Similarity:399/1116 - (35%) Gaps:295/1116 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 DGTVGDATNKSLLQMIL------------SRKRLSPTN-------KRNSHIESVA-KYWGEFYLD 84
            ||:.|:...:|..|:.|            .|.|..|..       |.|..:.|.| |.|.|.|.|
plant    29 DGSGGENQERSSDQIELDDDDFQETRPKPKRSRTHPPQQNLIEVVKGNGDLISKAVKIWVERYED 93

  Fly    85 SPTAALVALLQFVVEVSGSHYQIPDDTSMPFSYSDIL--------SNSSSHFSNTHIYPLIRKPA 141
            ||:.|...||..:.:..|:.|.|.||........|::        :.....:.::.     :|..
plant    94 SPSLATTELLSMLFQACGAKYSIKDDLLDETDVDDVVVSLVNLARAGELEDYQSSR-----KKEL 153

  Fly   142 DVFVNQVGSFLNALLLVANKFRSDSYQLFLVQLTNFVMACSESNIRTFRHTATMIGLKIMTILSD 206
            ..|...:.||.|.|::...........|| .:..::::|.|.:..|.:|.|||::||:::|....
plant   154 KNFKENLVSFWNNLIIECQNGPLFDRVLF-DKCMDYIIALSCTPPRVYRQTATLMGLQLVTSFIS 217

  Fly   207 ----------------------------LKSLDDEIAMT---------VWMQMFNSMFVARSRDI 234
                                        :.||:..:::|         :..::|..:||.|.|||
plant   218 VANTLGSQRETTQRQLNAESKKRADGPRVDSLNKRLSVTHEQITTLEDMMRKIFTGLFVHRYRDI 282

  Fly   235 VTDIRLLCISELGQWFARYPHCHLQPTSLRIFYEALNDGSGDVIQCSLDNISVLCRKDVLFSEIV 299
            ..|||:.||..||.|...||...||...|:.....|||.:..|.:.||..:..|...|.....:.
plant   283 DNDIRMSCIQSLGIWILSYPSLFLQDLYLKYLGWTLNDKNAGVRKASLLALQKLYEMDENVPTLG 347

  Fly   300 ALTSEFREILVELCLGKEDAIAEKSV-------QFLTHFHVLSAEILTDDVCRVLEQLIM----A 353
            ..|..|...::|:.   :|.....:|       |.|.|      :::.||....|..|::    .
plant   348 LFTQRFSNRMIEMA---DDVDMSAAVCAIGLVKQLLRH------QLIPDDDLGPLYDLLIDQPQE 403

  Fly   354 ANRGLAQAAADLFILRR--------NGLDGETFCQRVKHLLQLFIECGHEQ--ADYLVDSLIDNC 408
            ..|.:.:...|..|.::        .|.|..:....:..:||:..|...:.  ..|::|.:.:..
plant   404 IRRAIGELVYDHLIAQKFNSSPSSLTGHDDSSSEIHIFRMLQILREFSTDPILCVYVIDDVWEYM 468

  Fly   409 ELVLDWKSMIAVLL-ENPKSRELSDIHCSSLIAILLAGVKQATAGEIPPG-----RYTKDLKREP 467
            :.:.|||.:|::|| :||::...:|...::||.:|...:::|...:|.|.     :|....:||.
plant   469 KAMKDWKCIISMLLDQNPRTGSTTDEDSTNLIRLLFVSIRKAVGEKIIPSTDNRKQYHSKAQREI 533

  Fly   468 RQGAQERATKCLAPVLPELLRTYANRLQDIERLLELPKYFCFDYY----HEQN------------ 516
            .:..::..|..:....|:|||.:......:..|:|:..:...:.|    .||:            
plant   534 FENNRKDITVAMMKNYPQLLRKFMADKAKVSSLVEIIIFMKLELYSLKRQEQSFKAAVRLIKDAF 598

  Fly   517 -RMGQLNELVEHFELIIFDQTSSTTVLQI----TVKTL--EFLNRMIPIPLTKQLLNSAVTNYKM 574
             :.|:...|....:.|.|..:.|...||.    .:|.|  |.|::          :.||:...| 
plant   599 FKHGEKEALRSCVKAITFCASESKGELQDFSRGKLKDLEDELLDK----------ITSAIREVK- 652

  Fly   575 AWHRTQDTSPSRSTHNESNRLLATLRLLTVLSGHFNLSKWDLTEPLLFSLKMLLRQRRLPNGDDL 639
                         ..|:...||..|:.|..|    .|||..|.|.:...:.:.|...|     :|
plant   653 -------------DGNDEYSLLVNLKRLYEL----QLSKPVLVESMFDEIALTLHNFR-----NL 695

  Fly   640 PPEAFSLYLKACFCCLCWDME---NLEGTA---------------------LNNV-DMDEYCDVL 679
            ..|.....|......|.|.:.   |.|..:                     ||.: :..:|.:.|
plant   696 DEEVICFLLLNMHMYLAWYLHSIINCEAISEASLSSLISKRDTLFEELSYFLNGIEESKKYGNQL 760

  Fly   680 HHNLEDYLYVTFSLVGKSNTEPLAYPCFSYTCDLFVLH--GNLCGSS-NPSIRSVAHVPSGNELD 741
            .:.:...|..|:.|..|||.:........|..|...|.  ..||... |.|          :|.|
plant   761 SNRICAILAETWCLFRKSNYDSGKLERLGYCPDSVFLEKFWKLCAEMFNTS----------DETD 815

  Fly   742 ILEGFLMEHFLELSPSDLMLETNSDQLQRIRSILTSYLKVVCLGVVPTMRASKFYEYYVKYHAPF 806
              |....:.::|        |||.|.     |::.: .|:|...|||..........::..|.| 
plant   816 --EEDENKEYIE--------ETNRDV-----SVIAA-CKLVASDVVPKDYLGPEIISHLGMHGP- 863

  Fly   807 GDVMRCSMELALQRNPIHFAMTMLHTCLLLYAKVFPDDTRH-----------------AAGQRAL 854
                               .:|.:...|:.:.:...||..:                 ::|:...
plant   864 -------------------GVTGIIKNLITFLRKKEDDISNIYLESLKRAYHRYSSELSSGREES 909

  Fly   855 RPAE-FSELMELANRLAKILISNPM-EHRECVIALHRSGILFVFELAQKQPTEATKKLPFLRV-L 916
            |..: ..|..|||..|:.:.|.... ::|..::::.:.|:.|.|.       :|.|:|.||.| :
plant   910 RVDKCLEEWRELAGGLSGMYIGAARNKYRLEILSVVKEGVEFAFR-------DAPKQLLFLEVAI 967

  Fly   917 KVFVPLLLVQD--------KTRILN---------------FFEPYEQLIIPTCNRN-DIAHLKEY 957
            ..|...|.|.|        :.||::               |.|..|:    .|.:| |:...||.
plant   968 LPFATRLSVSDIIDIKKDVQGRIVHVNTDEDPSGWRPCFTFLETLEE----KCLKNEDLQDDKEA 1028

  Fly   958 RNAL---RPRK 965
            .|..   ||||
plant  1029 ANVRRRGRPRK 1039

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SA-2NP_612109.3 STAG 134..217 CDD:285686 20/110 (18%)
SCC3NP_566119.1 STAG 143..247 CDD:400698 18/109 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 193 1.000 Domainoid score I927
eggNOG 1 0.900 - - E1_COG5537
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60131
OrthoDB 1 1.010 - - D167826at2759
OrthoFinder 1 1.000 - - FOG0000572
OrthoInspector 1 1.000 - - otm3569
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11199
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.890

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