DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SA-2 and stag2b

DIOPT Version :9

Sequence 1:NP_612109.3 Gene:SA-2 / 38167 FlyBaseID:FBgn0043865 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_005173250.1 Gene:stag2b / 560751 ZFINID:ZDB-GENE-030131-2785 Length:1276 Species:Danio rerio


Alignment Length:1083 Identity:256/1083 - (23%)
Similarity:456/1083 - (42%) Gaps:185/1083 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDISFDD-----AVLNDSQASNQMDFEIREECSIAPNDEPVCVDGTVG---------DATNKSLL 52
            ||..|||     |::...:|         ::....|.::...:...||         ...|..|.
Zfish    23 SDTDFDDPDGRNAIIGKGKA---------KKGKKGPGEKGKGMGKGVGRMNGHHQENGMENVMLF 78

  Fly    53 QMILSRKRLSPTNKRNSHIESVAKYWGEFYLDSPTAALVALLQFVVEVSGSHYQIPDDTSMPFSY 117
            :::    ||.     .|.::||...|.|.|......||:.|:.|.::.||....:..:.......
Zfish    79 EVV----RLG-----KSAMQSVVDDWIESYKHDRDVALLDLINFFIQCSGCKGVVSGEMFRNMQN 134

  Fly   118 SDILSNSSSHF-SNTHIYPLI------RKPADVFVNQVGSFLNALLLVANKFRSDSYQLFLVQ-L 174
            |:|:...:..| .::..|||.      :|....|...:|      :||.....|..|..:::. :
Zfish   135 SEIIRKMTEEFDEDSGDYPLTMTGPQWKKFKSSFCEFIG------VLVRQCQYSIIYDEYMMDTV 193

  Fly   175 TNFVMACSESNIRTFRHTATMIGLKIMTIL----------------------------------- 204
            .:.:...|:|.:|.||||:|:..:|:||.|                                   
Zfish   194 ISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANDRLE 258

  Fly   205 ------SDLKSLDDEIAMTVWMQMFNSMFVARSRDIVTDIRLLCISELGQWFARYPHCHLQPTSL 263
                  .:|:...|||. .:...:|..:||.|.||.:.:||.:||.|:|.|...|....|..:.|
Zfish   259 LLLQKRKELQENQDEIE-NMMNAIFKGVFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYL 322

  Fly   264 RIFYEALNDGSGDV-IQCSLDNISVLCRKDVLFSEIVALTSEFREILVELCLGKEDAIAEKSVQF 327
            :.....::|..|:| ::| |..:..|.....|.:::...||.|::.:|.:.|.||..:|.::::.
Zfish   323 KYVGWTMHDKQGEVRLKC-LTALQGLYHNRELNAKLELFTSRFKDRIVSMTLDKEYDVAVQAIKL 386

  Fly   328 LTHFHVLSAEILTDDVCRVLEQLIMAANRGLAQAAAD-----LF---------ILRRNGLDGETF 378
            ||.....|.|:||.:.|..:..|:.:|:|.:|.||.:     ||         :.:|.|..... 
Zfish   387 LTLVLHSSDEVLTAEDCESVYHLVYSAHRPVAVAAGEFLFKKLFSHRDPEDDSMPKRRGRQSVN- 450

  Fly   379 CQRVKHLLQLFIECG-HEQADYLVDSLIDNC--ELVLDWKSMIAVLLENPKSRE--LSDIHCSSL 438
            ...:|..:..|:|.. ||.|.|||||:.| |  ||:.||:.||::||:.|...|  |:|...::|
Zfish   451 ANLIKTTVFFFLESELHEHAAYLVDSMWD-CAAELLKDWECMISLLLDEPLPGEEALTDRQETAL 514

  Fly   439 IAILLAGVKQATAGEIPPGRYT-------KDLKREPRQGAQERATKCLAPVLPELLRTYANRLQD 496
            |.|||..::||.....|.||.|       |:.|.:  ...:.|.|:..|..||.||..|:...:.
Zfish   515 IEILLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQ--LDDRTRMTELFAIALPALLAKYSVDAEK 577

  Fly   497 IERLLELPKYFCFDYY-------HEQNRMGQLNELVEHFELIIFDQTSSTTVLQITVKTLEFL-- 552
            :..||:||::|..:.|       |..:.:.|:.|:||        :.:.|.||:...||...|  
Zfish   578 VTNLLQLPQFFDLEIYTTGRLEKHLDSLLRQIREIVE--------KHTDTDVLEACSKTYHSLCN 634

  Fly   553 ------NRMIPIPLTK-QLLNSAVTNY-KMAWHRTQD-TSPSRSTHNESNRLLATLRLLTVLSGH 608
                  ||   :.:.: |||:..|..: |:.....|: ..|.   .:::.::|:||:.::.....
Zfish   635 EEFTIFNR---VDIARSQLLDEQVDKFNKLLEDFLQEGEDPD---EDDAYQVLSTLKRISAFYNA 693

  Fly   609 FNLSKWDLTEPLLFSLKMLLRQRRLPNGDDLPPEAFSLYLKACFCCLCWDMENLEGTALNNVDMD 673
            .:|||||     ||:....|....:.|| |:|.:.....|:.....:.|.:..:........|| 
Zfish   694 HDLSKWD-----LFTSNYKLLNTGIENG-DMPEQIVVHALQCTHYVILWSLAKVSEGCYKKEDM- 751

  Fly   674 EYCDVLHHNLEDYLYVTFSLVGKSNTEPLAYPCFSYTCDLFVLHGN-LCGSSNPSIRSVAHVPSG 737
               ..|...:..:..:....:...|| .:....|:..|||.::..: :......::..:.:.|..
Zfish   752 ---LTLRKQMRAFCLMCQRYLTSVNT-AVKEQAFTILCDLLLIFSHQIISGGREALEPLVYTPEA 812

  Fly   738 NELDILEGFLMEH-FLELSPSDLMLETNSDQ-------LQRIRSILTSYLKVVCLGVVPTMRASK 794
            :....|..|:::| |::........:...|.       |.:.|::|.:|.|::...||.....:.
Zfish   813 SLQSELLNFILDHVFIDQDEDSNSTDGQQDDEAGKIEALHKRRNLLAAYCKLIIYNVVEMSTGAD 877

  Fly   795 FYEYYVKYHAPFGDVMRCSMELALQRNPIHFAMTMLHTCLLLY----AKVFPDDTRHAAGQRALR 855
            .::.|::|:..:||:::.:|....|.:.|..|.|::.:...|:    :::.|...|.::.     
Zfish   878 IFKQYMRYYNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMLSELGPSFDRSSSA----- 937

  Fly   856 PAEFSELMELANRLAKILISNPMEHRECVIALHRSGILFVFELAQKQ-PTEATKKLPFLRVLKVF 919
               |..:.|||.|.:.....:.::.||.:..||:.||.|.|:.|..| .......|.||.:|..|
Zfish   938 ---FCGIKELARRFSLTFGLDQLKTREAIAMLHKDGIEFAFKEANPQGDGHPPLNLAFLDILSEF 999

  Fly   920 VPLLLVQDKTRILNFFEPYEQLIIPTCNRNDIAHLKEYRNALR 962
            ...|:.|||..:..:.|.:....:.....:....|..|||:|:
Zfish  1000 SSKLMRQDKRTVHMYLERFMTFQMALQREDCWLPLISYRNSLQ 1042

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SA-2NP_612109.3 STAG 134..217 CDD:285686 26/130 (20%)
stag2bXP_005173250.1 STAG 150..258 CDD:312124 22/113 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595642
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5537
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60131
OrthoDB 1 1.010 - - D167826at2759
OrthoFinder 1 1.000 - - FOG0000572
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11199
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
98.820

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