DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SA2 and SA1

DIOPT Version :10

Sequence 1:NP_612109.3 Gene:SA2 / 38167 FlyBaseID:FBgn0043865 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_477268.2 Gene:SA1 / 33974 FlyBaseID:FBgn0020616 Length:1127 Species:Drosophila melanogaster


Alignment Length:1043 Identity:295/1043 - (28%)
Similarity:489/1043 - (46%) Gaps:124/1043 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 REECSIAPNDEPV------CVDGTVGDATNKSLLQMILSRKRLSPTNKRNSHIESVAKYWGEFYL 83
            |:|....|..|||      .:|......|:::.|..|:...:        :.|.|:...|.|.|.
  Fly    84 RKERVERPRKEPVDKGHHERIDSEREITTDENSLYYIVRHSK--------NPIASIVDQWIEQYK 140

  Fly    84 DSPTAALVALLQFVVEVSGSHYQIPDDTSMPFSYSDILSNSSSHF-SNTHIYPLI------RKPA 141
            .:...|||||:||.:..||...:|.:|...|..::.|:...:..| ..:..||||      ||  
  Fly   141 ANRETALVALMQFFINASGCKGKISEDIQYPVDHTSIIRRMTEEFDEESGEYPLIMSGTQWRK-- 203

  Fly   142 DVFVNQVGSFLNALL------LVANKFRSDSYQLFLVQLTNFVMACSESNIRTFRHTATMIGLKI 200
              |.|....|:..|:      ::.::|..|:       :.:.:...|:|.:|.||||||:..:|:
  Fly   204 --FKNNFCDFVQTLVKQCQYSIIYDQFLMDN-------VISLLTGLSDSQVRAFRHTATLAAMKL 259

  Fly   201 MTILSD--------------------LKSLD---------------------DEIAMTVWMQMFN 224
            ||.|.|                    :||.|                     ||| .::...||.
  Fly   260 MTALVDVALLVSNNFDNAAKQFEAERVKSRDRRASDRLDSLMTKRSELEENMDEI-KSMLTYMFK 323

  Fly   225 SMFVARSRDIVTDIRLLCISELGQWFARYPHCHLQPTSLRIFYEALNDGSGDV-IQCSLDNISVL 288
            |:||.|.||.:.|||.:|::|:|.|...||...|..:.|:.....|:|..|:| ::| |.::..|
  Fly   324 SVFVHRYRDSLPDIRAICMAEIGIWMENYPQNFLDDSYLKYIGWTLHDKIGEVRLRC-LQSLLPL 387

  Fly   289 CRKDVLFSEIVALTSEFREILVELCLGKEDAIAEKSVQFLTHFHVLSAEILTDDVCRVLEQLIMA 353
            ..||.|..::...||:|::.:|.:.|.||..::..:|:.:.....:..|||.|..|.::.:|:.:
  Fly   388 YEKDELKGKLELFTSKFKDRIVAMTLDKEFEVSVHAVKLVISILKIHPEILADKDCEIVYELVYS 452

  Fly   354 ANRGLAQAAADLFILRRNGLDG---ETFCQR----------VKHLLQLFIECG-HEQADYLVDSL 404
            ::||:|||||:...:|...|..   ||..:|          |:.|:|.|||.. ||...|||||.
  Fly   453 SHRGVAQAAAEFLNVRLFHLTADMEETKTKRGKVRMPNTPLVRDLVQFFIESELHEHGAYLVDSF 517

  Fly   405 IDNCELVLDWKSMIAVLLENPKSRE--LSDIHCSSLIAILLAGVKQATAGEIPPGRYT------- 460
            ||:.::|.||:.|..:|||.|...|  |.:...|:||.|:::.|||:..||:|.||.:       
  Fly   518 IDSNDMVRDWECMTDLLLEEPGPNEEVLDNKQESTLIEIMVSSVKQSATGEVPVGRASNRKCTLS 582

  Fly   461 -KDLKREPRQGAQERATKCLAPVLPELLRTYANRLQDIERLLELPKYFCFDYYHEQNRMGQLNEL 524
             |:||  ..|..:.:.|:.....||.||..|....:.:..||.:|:||..:.|....:.|.|..|
  Fly   583 AKELK--AIQDEKAKLTEHFIVTLPSLLEKYQADSEKLANLLAVPQYFDLNLYTTNRQEGNLQAL 645

  Fly   525 VEHFELIIFDQTSSTTVLQITVKTLEFLNRMIPIPLTK------QLLNSAVTNYKMAWHRTQDTS 583
            ::....::...| ...||:...||||.|........|:      .::.|||..||.|....::..
  Fly   646 LDRINQVMSMHT-GREVLETCAKTLECLCAEGSATYTRCNIARSNIIESAVNKYKDAIEEWRNLI 709

  Fly   584 PSRSTHNESN--RLLATLRLLTVLSGHFNLSKWDLTEPLLFSLKMLLRQRRLPNGDDLPPEAFSL 646
            ....|.||.:  .:..||::|::|....||:.|:|.:.|...::....:..:..  .||.||...
  Fly   710 QGEETPNEDDIYNITITLKVLSILYSSHNLNPWELFKSLFQDVEEAQSKENIDR--CLPNEALVY 772

  Fly   647 YLKACFCCLCWDMENLEGTALNNVDMDEYCDVLHHNLEDYLYVTFSLVGKSNTEPLAYPCFSYTC 711
            .::||:..:.|.::.:|... .:|::.|....|.:||:.::...|.|.....|..:....:...|
  Fly   773 CIEACYFSISWGLQYVENEC-ESVNVTEVVAELRNNLDTFMGACFELTRDGPTVQIQEAAYQSIC 836

  Fly   712 DLFVLHGN-LCGSSNPSIRSVAHVPSGNELDILEGFLMEHFLELSPSDLMLETNSDQLQRIRSIL 775
            ||.::..: |..|....||.:.:....:|..||:.|:..:...|.......||..::|.:.|:.|
  Fly   837 DLLIIFSDKLARSEIEHIRGLEYKSRMDEHLILDNFVQHYVFSLKQDVAQDETRIEELHKKRNFL 901

  Fly   776 TSYLKVVCLGVVPTMRASKFYEYYVKYHAPFGDVMRCSMELALQRNPIHFAMTMLHTCLLLYAKV 840
            ..|.|:|...::|||||:..::||||.:..:||:::.::..|.:.|.::||||:|.:.:.:: |.
  Fly   902 ACYCKLVVYNIIPTMRAASIFKYYVKCYNDYGDIIKATLGKAREINKVNFAMTLLLSLITVF-KS 965

  Fly   841 FPDDTRHAAGQRALRPAEFSELMELANRLAKILISNPMEHRECVIALHRSGILFVFELAQKQPTE 905
            ..:.:......::.:  ||.:|.|||.|.|.....:.:::||.|.|:||.||.|........|..
  Fly   966 LQEQSEDGIVSKSSQ--EFVDLKELAKRFALTFGFDAIKNRESVAAIHRGGIYFAANKEPDDPVR 1028

  Fly   906 ATKKLPFLRVLKVFVPLLLVQDKTRILNFFEPYEQLIIPTCNRNDIAHLKEYRNALRPRKTKSYP 970
            |..:|.||.||..|...||.|||..|::|.:......:|:....:...|..|||:|...:|...|
  Fly  1029 APTRLLFLEVLNEFNYKLLKQDKKVIMSFLDKIIPPAMPSSRAEEWQPLILYRNSLLHGETDQAP 1093

  Fly   971 QAT 973
            .|:
  Fly  1094 VAS 1096

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SA2NP_612109.3 IRR1 <115..>329 CDD:227824 71/268 (26%)
STAG 132..>215 CDD:462502 31/135 (23%)
SA1NP_477268.2 IRR1 66..>426 CDD:227824 98/362 (27%)
STAG 190..303 CDD:462502 29/123 (24%)

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