DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SA-2 and Stag1

DIOPT Version :9

Sequence 1:NP_612109.3 Gene:SA-2 / 38167 FlyBaseID:FBgn0043865 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_033308.2 Gene:Stag1 / 20842 MGIID:1098658 Length:1258 Species:Mus musculus


Alignment Length:1028 Identity:242/1028 - (23%)
Similarity:446/1028 - (43%) Gaps:165/1028 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 GDATNKSLLQMILSRKRLSPTNKRNSHIESVAKYWGEFYLDSPTAALVALLQFVVEVSGSHYQIP 108
            ||....:|.:::...|         |.::||...|.|.|......||:.|:.|.::.||....:.
Mouse    80 GDGDPVTLFEVVKLGK---------SAMQSVVDDWIELYKQDRDIALLDLINFFIQCSGCRGTVR 135

  Fly   109 DDTSMPFSYSDILSNSSSHF-SNTHIYPLI------RKPADVFVNQVGSFLNALL------LVAN 160
            .:.......::|:...:..| .::..|||.      :|    |.:....|:..|:      ::.:
Mouse   136 IEMFRNMQNAEIIRKMTEEFDEDSGDYPLTMPGPQWKK----FRSNFCEFIGVLIRQCQYSIIYD 196

  Fly   161 KFRSDSYQLFLVQLTNFVMACSESNIRTFRHTATMIGLKIMTIL--------------------- 204
            ::..|:       :.:.:...|:|.:|.||||:|:..:|:||.|                     
Mouse   197 EYMMDT-------VISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNTQRQYEAE 254

  Fly   205 --------------------SDLKSLDDEIAMTVWMQMFNSMFVARSRDIVTDIRLLCISELGQW 249
                                .:|:...|||. .:...:|..:||.|.||.:.:||.:||.|:|.|
Mouse   255 RNKMIGKRANERLELLLQKRKELQENQDEIE-NMMNSIFKGIFVHRYRDAIAEIRAICIEEIGVW 318

  Fly   250 FARYPHCHLQPTSLRIFYEALNDGSGDV-IQCSLDNISVLCRKDVLFSEIVALTSEFREILVELC 313
            ...|....|..:.|:.....|:|..|:| ::| |..:..|.....||.::...|:.|::.:|.:.
Mouse   319 MKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKC-LKALQSLYTNRELFPKLELFTNRFKDRIVSMT 382

  Fly   314 LGKEDAIAEKSVQFLTHFHVLSAEILTDDVCRVLEQLIMAANRGLAQAAADLFILR--------- 369
            |.||..:|.::::.:|.....|.|.|:::.|..:..|:.:|:|.:|.||.:....:         
Mouse   383 LDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLVYSAHRPVAVAAGEFLHKKLFSRHDPQA 447

  Fly   370 ---------RNGLDGETFCQRVKHLLQLFIECG-HEQADYLVDSLIDNC-ELVLDWKSMIAVLLE 423
                     ||..:|..    ::.|:..|:|.. ||.|.||||||.::. ||:.||:.|..:|||
Mouse   448 EEALAKRRGRNSPNGNL----IRMLVLFFLESELHEHAAYLVDSLWESSQELLKDWECMTELLLE 508

  Fly   424 NPKSRE--LSDIHCSSLIAILLAGVKQATAGEIPPGRYT-----KDLKREPRQGAQERATKCLAP 481
            .|...|  :||...|:||.:::..::||.....|.||.|     ...:|:.:...:.:.|:....
Mouse   509 EPVQGEEAMSDRQESALIELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQIDDRNKLTEHFII 573

  Fly   482 VLPELLRTYANRLQDIERLLELPKYFCFDYYHEQNRMGQLNELVEHFELIIFDQTSSTTVLQITV 546
            .||.||..|:...:.:..||::|:||..:.|........|:.|::..:.:: ::...:.||:...
Mouse   574 TLPMLLSKYSADAEKVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVV-EKHVESDVLEACS 637

  Fly   547 KTLEFL--------NRMIPIPLTK-QLLNSAVTNYKMAWHRTQD--TSPSRSTHNESNRLLATLR 600
            ||...|        ||   :.:.: ||::..|..:.   |..:|  .....:..::...:|:||:
Mouse   638 KTYSILCSEEYTIQNR---VDIARSQLIDEFVDRFN---HSVEDLLQEGEEADDDDIYNVLSTLK 696

  Fly   601 LLTVLSGHFNLSKWDLTEPLLFSLKMLLRQRRLPNGDDLPPEAFSLYLKACFC---CLCWDMENL 662
            .||......:|:||||.......||..:....:|.         .:.::|..|   .:.|.:..:
Mouse   697 RLTSFHNAHDLTKWDLFGNCYRLLKTGIEHGAMPE---------QIVVQALQCSHYSILWQLVKI 752

  Fly   663 EGTALNNVDMDEYCDVLHHNLEDYLYVTFSLVGKSNTEPLAYPCFSYTCDLFVL--HGNLCGSSN 725
            ...:.:..|:    .||...::.:|.|....:...|| |:....|...|||.::  |..:.|...
Mouse   753 TDGSPSKEDL----LVLRKTVKSFLAVCQQCLSNVNT-PVKEQAFMLLCDLLMIFSHQLMTGGRE 812

  Fly   726 PSIRSVAHVPSGNELDILEGFLMEH-FLELSPSDLMLETNSDQ-------LQRIRSILTSYLKVV 782
            .....|.:..:|.:.::| .|:|:| |::....:..:|.:.:.       |.:.|::|.::.|::
Mouse   813 GLQPLVFNPDTGLQSELL-SFVMDHVFIDQDEENQSMEGDEEDEANKIEALHKRRNLLAAFSKLI 876

  Fly   783 CLGVVPTMRASKFYEYYVKYHAPFGDVMRCSMELALQRNPIHFAMTMLHTCLLLYAKVFPDDTRH 847
            ...:|....|:..:::|:||:..:||:::.::....|.:.|..|.|:    :|...::|.:..:.
Mouse   877 IYDIVDMHAAADIFKHYMKYYNDYGDIIKETLSKTRQIDKIQCAKTL----ILSLQQLFNELVQE 937

  Fly   848 AAGQRALRPAEFSELMELANRLAKILISNPMEHRECVIALHRSGILFVFELA-QKQPTEATKKLP 911
            .........|..|.:.|||.|.|.....:.::.||.|..||:.||.|.|:.. ||........|.
Mouse   938 QGPNLDRTSAHVSGIKELARRFALTFGLDQIKTREAVATLHKDGIEFAFKYQNQKGQEYPPPNLA 1002

  Fly   912 FLRVLKVFVPLLLVQDKTRILNFFEPY--EQLIIPTCNRNDI-AHLKEYRNAL 961
            ||.||..|...||.|||..:.::.|.:  ||::.   .|.|: ..|..|||:|
Mouse  1003 FLEVLSEFSSKLLRQDKKTVHSYLEKFLTEQMME---RREDVWLPLISYRNSL 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SA-2NP_612109.3 STAG 134..217 CDD:285686 24/135 (18%)
Stag1NP_033308.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..59
RFX5_DNA_bdg 3..>58 CDD:373167
STAG 160..268 CDD:369917 20/118 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1055..1148
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849836
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5537
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60131
OrthoDB 1 1.010 - - D167826at2759
OrthoFinder 1 1.000 - - FOG0000572
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11199
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.820

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