DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SA-2 and stag2

DIOPT Version :9

Sequence 1:NP_612109.3 Gene:SA-2 / 38167 FlyBaseID:FBgn0043865 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_002931833.2 Gene:stag2 / 100379784 XenbaseID:XB-GENE-998552 Length:1275 Species:Xenopus tropicalis


Alignment Length:1010 Identity:254/1010 - (25%)
Similarity:440/1010 - (43%) Gaps:171/1010 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 SHIESVAKYWGEFYLDSPTAALVALLQFVVEVSGSHYQIPDDTSMPFSYSDILSNSSSHF-SNTH 132
            |.::||...|.|.|..:...||:.|:.|.::.||....:..|.......|:|:...:..| .::.
 Frog   105 SAMQSVVDDWIEAYKHNKDVALLDLINFFIQCSGCKGVVSGDMFRHMQNSEIIRRMTEEFDEDSG 169

  Fly   133 IYPLI------RKPADVFVNQVGSFLNALLLVANKFRSDSYQLFLVQ-LTNFVMACSESNIRTFR 190
            .|||.      :|....|...:|      :||.....|..|..:::. :.:.:...|:|.:|.||
 Frog   170 DYPLTMAGPQWKKFKFSFCEFIG------VLVRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFR 228

  Fly   191 HTATMIGLKIMTIL-----------------------------------------SDLKSLDDEI 214
            ||:|:..:|:||.|                                         .:|:...|||
 Frog   229 HTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANDRLELLLQKRKELQENQDEI 293

  Fly   215 AMTVWMQMFNSMFVARSRDIVTDIRLLCISELGQWFARYPHCHLQPTSLRIFYEALNDGSGDV-I 278
            . .:...:|..:||.|.||.:.:||.:||.|:|.|...|....|..:.|:.....::|..|:| :
 Frog   294 E-NMMNAIFKGVFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRL 357

  Fly   279 QCSLDNISVLCRKDVLFSEIVALTSEFREILVELCLGKEDAIAEKSVQFLTHFHVLSAEILTDDV 343
            :| |..:..|.....|.|::...||.|::.:|.:.|.||..:|.::::.||.....|.|:||.:.
 Frog   358 KC-LTALQGLYHNRELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAED 421

  Fly   344 CRVLEQLIMAANRGLAQAAAD-----LF---------ILRRNGLDGETFCQRVKHLLQLFIECG- 393
            |..:..|:.:|:|.:|.||.:     ||         |::|.|..... ...||.|:..|:|.. 
 Frog   422 CENVYHLVYSAHRPVAVAAGEFLYKKLFSCRDPEEDGIMKRRGRLSPN-ANLVKTLVFFFLESEL 485

  Fly   394 HEQADYLVDSLIDNC--ELVLDWKSMIAVLLENPKSRE--LSDIHCSSLIAILLAGVKQATAGEI 454
            ||.|.|||||:.| |  ||:.||:.|.::||::|.:.|  |:|...|:||.|:|..::||.....
 Frog   486 HEHAAYLVDSMWD-CATELLKDWECMNSLLLDDPLNGEEALTDRQESALIEIMLCTIRQAAECHP 549

  Fly   455 PPGRYT-------KDLKREPRQGAQERATKCLAPVLPELLRTYANRLQDIERLLELPKYFCFDYY 512
            |.||.|       |:.|.:  ...:.|.|:..|..||:||..|:...:.:..||.||:||..:.|
 Frog   550 PVGRGTGKRVLTAKEKKSQ--MDDKTRLTELFAVSLPQLLAKYSVDAEKVTNLLVLPQYFDLEIY 612

  Fly   513 HEQNRMGQLNELVEHFELI------IFDQTSSTTVLQITVKTLEFL--------NRMIPIPLTK- 562
                   ....|.:|.|.:      |.::.:.|.||:...||...|        ||   :.:.| 
 Frog   613 -------TTGRLEKHLEALLRQIRNIVEKHTDTDVLEACSKTYHALCNEEFTIFNR---VDIAKS 667

  Fly   563 QLLNSAVTNYKMAWHRTQDTSPSRSTHNESN--RLLATLRLLTVLSGHFNLSKWDLTEPLLFSLK 625
            ||::.....:.   ...:|........:|.:  ::|:||:.:|......:||:||     |||..
 Frog   668 QLIDELADKFN---RLLEDFLQEEEELDEDDAYQVLSTLKRITAFHNAHDLSRWD-----LFSGN 724

  Fly   626 MLLRQRRLPNGDDLPPEAFSLYLKAC-FCCLCWDMENLEGTALNNVD-------MDEYCDVLHHN 682
            ..|.:..:.|||  .||...::...| ...:.|.:..:..|..:..:       |..:|.:..| 
 Frog   725 YKLLKTGIENGD--MPEQIVIHALQCTHYVILWQLAKISETGSSKEELITLKRQMRVFCQICQH- 786

  Fly   683 LEDYLYVTFSLVGKSNTEPLAYPCFSYTCDLFVL--HGNLCGSSNPSIRSVAHVPSGNELDILEG 745
                 |:|     ..|| .:....|:..||:.::  |..:.| ...::..:.:.|..:....|..
 Frog   787 -----YLT-----NVNT-AVKEQAFTILCDVLMIFSHQIVVG-GREALEPLVYSPDSSLQSELLS 839

  Fly   746 FLMEH-FLELSPSDLMLETNSDQ-------LQRIRSILTSYLKVVCLGVVPTMRASKFYEYYVKY 802
            |:::| |::....:...:...|.       |.:.|::|.::.|::...||.....:..::.|::|
 Frog   840 FILDHVFIDQDDDNNSSDGQQDDEASKIEALHKRRNLLAAFCKLIVYNVVEMNTGADVFKQYMRY 904

  Fly   803 HAPFGDVMRCSMELALQRNPIHFAMTMLHTCLLLYAKVFPDDTRHAAGQRALRPAEFSELMELAN 867
            :..:||:::.:|....|.:.|..|.|::.:...|:.::..:   |:.......|. ||.:.|||.
 Frog   905 YNDYGDIIKETMSKTRQIDKIQCAKTLILSLQQLFNEMIQE---HSYNFDRSSPT-FSGIKELAR 965

  Fly   868 RLAKILISNPMEHRECVIALHRSGILFVFELAQKQPTEATKKLP-----FLRVLKVFVPLLLVQD 927
            |.|.....:.::.||.:..||:.||.|.|    |:|:...:..|     ||.:|..|...||.||
 Frog   966 RFALTFGLDQLKTREAIAMLHKDGIEFAF----KEPSPQGEAHPPLNMAFLDILSEFSSKLLRQD 1026

  Fly   928 KTRILNFFEPYEQLIIPTCNRNDI-AHLKEYRNAL 961
            |..:..:.|.:....: :..|.|: ..|..|||:|
 Frog  1027 KKTVYAYLEKFMTFQM-SLRREDVWLPLMSYRNSL 1060

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SA-2NP_612109.3 STAG 134..217 CDD:285686 26/130 (20%)
stag2XP_002931833.2 STAG 169..277 CDD:400698 22/113 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60131
OrthoDB 1 1.010 - - D167826at2759
OrthoFinder 1 1.000 - - FOG0000572
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11199
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.030

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