Sequence 1: | NP_001261249.1 | Gene: | Herc4 / 38151 | FlyBaseID: | FBgn0035207 | Length: | 1062 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_012915.3 | Gene: | UFD4 / 853859 | SGDID: | S000001493 | Length: | 1483 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 1327 | Identity: | 260/1327 - (19%) |
---|---|---|---|
Similarity: | 442/1327 - (33%) | Gaps: | 500/1327 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 63 ACGS---NDYSQLGHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDNDC 124
Fly 125 GQLGHATDK-----------EIVQLPKV-------------------------VRQLVTKT-VVQ 152
Fly 153 IACGNNHSLALTSCGELYSWGSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFL 217
Fly 218 ISKSGAVFGWGRNNCGQLGLNDETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAG 282
Fly 283 AY-GQLGHGFSSNE---------MLPRMV------------MELMGSTITQVACGNRHTL----- 320
Fly 321 ALVPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQSNDSQVSLVIRQIFSGG 385
Fly 386 DQSIVTTTLFVDKVPPE-----------DFRNYNPK---SQILTLTAE---VTKQCAQCKQGLQ- 432
Fly 433 -----SDMDLLSSIE------LIFRSQACWNGSFLLDHDRHFGCSVRNHGLDLKAAQLAFDNLRA 486
Fly 487 VENESIRQVIWDNITKEL-----VGSLVCSPA-------DVESMRLYLLLPLYHEFVNSKHYKSL 539
Fly 540 QVPFANAIFKLAENPRKVLNKWLAQTPAEYFEHLVQNFLHV----VIHIISFKM---GL---AAA 594
Fly 595 SPSAERRQQLLPYN---------TEL-------------------------------EIILKLMK 619
Fly 620 TLCQINNERHD-------RLNYQIFY-----------------------------WPDL------ 642
Fly 643 ---------SDYADVQQE-------YVK--WIMADTARDFNI---------CNY---SFIFDQ-S 676
Fly 677 AKTALLQADQALQMHSAMANAA--------TMAFSF---------------FNYGMPISQF---- 714
Fly 715 --------------------IVLNVTRENLVQDSLRELQHYSQS-DLKKPLKIKFHGEEAEDAGG 758
Fly 759 VRKEFFMLLLKDLLDPKYGMFKEYEQSRLLWFADLTFETENMYF--------------------- 802
Fly 803 --LIGVLCGLAIYNFTIINLPFPLALFKKLLGK---------PVDLSD----LRQLSPPEANSMQ 852
Fly 853 SLLDYQGDDFK-EVFDLTFEISRDVFGEAETKCLKPNGNEIAVTLENRQEFVDLYVDFVFNKSVE 916
Fly 917 LHYNAFHKGFMKVCSGRVIHIFQPEELMAVVVGNEDYDWQ--ALQDNCEYREGYTSVDDTIKWFW 979
Fly 980 EVIHDMSEAEKKSFLLFLTGSDRIPIQGMKAL--KLTI-------QPTPDERFLPVAHTCFNLLD 1035
Fly 1036 LPRYKTKERLKYKLLQAIQQTQGFSLV 1062 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Herc4 | NP_001261249.1 | RCC1 | 6..55 | CDD:278826 | |
RCC1 | 59..110 | CDD:278826 | 10/49 (20%) | ||
RCC1 | 114..163 | CDD:278826 | 16/85 (19%) | ||
RCC1 | 167..218 | CDD:278826 | 10/50 (20%) | ||
RCC1 | 221..270 | CDD:278826 | 3/48 (6%) | ||
RCC1 | 273..322 | CDD:278826 | 12/75 (16%) | ||
RCC1_2 | 309..339 | CDD:290274 | 8/34 (24%) | ||
RCC1 | 327..390 | CDD:278826 | 10/62 (16%) | ||
HECTc | 715..1060 | CDD:238033 | 100/393 (25%) | ||
HECTc | 739..1059 | CDD:214523 | 93/367 (25%) | ||
UFD4 | NP_012915.3 | HUL4 | 581..1482 | CDD:227354 | 196/956 (21%) |
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG5021 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |