Sequence 1: | NP_001261249.1 | Gene: | Herc4 / 38151 | FlyBaseID: | FBgn0035207 | Length: | 1062 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_176767.1 | Gene: | AT1G65920 / 842904 | AraportID: | AT1G65920 | Length: | 1006 | Species: | Arabidopsis thaliana |
Alignment Length: | 832 | Identity: | 177/832 - (21%) |
---|---|---|---|
Similarity: | 320/832 - (38%) | Gaps: | 184/832 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 KELYCWGSTSHGQLGL--GGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGSN 67
Fly 68 DYSQLG--HDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDNDCGQLGHA 130
Fly 131 TDKEIVQLPKVVRQLVTK----------TVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSP 185
Fly 186 NDLTHCNYPLRLTTLLGIPLAAIACGGNHS-----------FLISKS-GAVFGWGRNNCGQLGLN 238
Fly 239 DETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMVME 303
Fly 304 LMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQ 368
Fly 369 SNDSQVSLV----IRQIFSGGDQSIVTTTLFVDKVPPEDFRNYNPKSQILTLTAEVTKQCAQCKQ 429
Fly 430 GLQSDMDLLSSIELIFRSQACWNGSFLLDHDRHFGCSVR---NHGLDLKAAQLA------FDNLR 485
Fly 486 AVENESIRQVIWDNITKELVGSLVCSPADVESMRLYLLLPLYHEFVNSKHYKS--LQVPFANAIF 548
Fly 549 KLAENPRKVLNKW-LAQTPAEYFEHLVQNFLHVVIHIISFKMGLAAASPSAERRQQLLPYNTELE 612
Fly 613 IILKLMKTLCQINNERHDRLNYQI-FYWPDLSDYAD---VQQEYVK----WIMADTARDFN---- 665
Fly 666 --ICN---YSFIFDQSAKTA-LLQADQALQMHSAMANAATMAFSFFNYGMPISQFIVLN--VTR- 721
Fly 722 ---ENLVQDSLRE-LQHY-------------SQSDLKKP--LKIKFHGEEAE 754 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Herc4 | NP_001261249.1 | RCC1 | 6..55 | CDD:278826 | 11/50 (22%) |
RCC1 | 59..110 | CDD:278826 | 9/52 (17%) | ||
RCC1 | 114..163 | CDD:278826 | 13/58 (22%) | ||
RCC1 | 167..218 | CDD:278826 | 15/61 (25%) | ||
RCC1 | 221..270 | CDD:278826 | 16/49 (33%) | ||
RCC1 | 273..322 | CDD:278826 | 12/48 (25%) | ||
RCC1_2 | 309..339 | CDD:290274 | 10/29 (34%) | ||
RCC1 | 327..390 | CDD:278826 | 19/66 (29%) | ||
HECTc | 715..1060 | CDD:238033 | 14/62 (23%) | ||
HECTc | 739..1059 | CDD:214523 | 5/18 (28%) | ||
AT1G65920 | NP_176767.1 | PH_PLC_plant-like | 14..126 | CDD:270171 | |
ATS1 | <291..646 | CDD:227511 | 97/414 (23%) | ||
FYVE | 639..699 | CDD:366594 | 17/107 (16%) | ||
Smc | <798..>864 | CDD:224117 | 11/65 (17%) | ||
BRX_N | 839..874 | CDD:372684 | 5/34 (15%) | ||
BRX | 948..1001 | CDD:369842 | 8/41 (20%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.920 |