DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and AT1G65920

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_176767.1 Gene:AT1G65920 / 842904 AraportID:AT1G65920 Length:1006 Species:Arabidopsis thaliana


Alignment Length:832 Identity:177/832 - (21%)
Similarity:320/832 - (38%) Gaps:184/832 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KELYCWGSTSHGQLGL--GGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACGSN 67
            |::..||:.:    ||  |.......|:|..:.......||.::.|.:|...:|..|:|:..|:.
plant   259 KDIMIWGAIT----GLIDGSKNQNDALSPKLLESATMFDVQSISLGAKHAALVTRQGEVFCWGNG 319

  Fly    68 DYSQLG--HDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDNDCGQLGHA 130
            :..:||  .::....|:.     :..|:|..:..:.|....:.|:::.|::..|| .|.|.:..:
plant   320 NSGKLGLKVNIDIDHPKR-----VESLEDVAVRSVACSDHQTCAVTESGELYLWG-IDGGTIEQS 378

  Fly   131 TDKEIVQLPKVVRQLVTK----------TVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSP 185
            ..           |.:|:          ||:.:|||..|:..:||.|:|:::||..:|.||..|.
plant   379 GS-----------QFLTRKISDVLGGSLTVLSVACGAWHTAIVTSSGQLFTYGSGTFGVLGHGSL 432

  Fly   186 NDLTHCNYPLRLTTLLGIPLAAIACGGNHS-----------FLISKS-GAVFGWGRNNCGQLGLN 238
            ..:|.   |..:.:|..:.:.:::||..|:           |..:|| |.:|.||..:.|:||..
plant   433 ESVTK---PKEVESLRRMKVISVSCGPWHTAAIVETANDRKFYNAKSCGKLFTWGDGDKGRLGHA 494

  Fly   239 DETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMVME 303
            |...:..||.:..|.......|:||...:|.|:..|.|:|.|:..:||||...:.::.:..::..
plant   495 DSKRKLVPTCVTELIDHDFIKVSCGWTLTVALSISGTVYTMGSSIHGQLGCPRAKDKSVNVVLGN 559

  Fly   304 LMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSALLQ 368
            |....:..:|.|:.| :|::.|.|.||.:|.|.:||||....:....|.:     |.|.|..|::
plant   560 LTRQFVKDIASGSHH-VAVLTSFGNVYTWGKGMNGQLGLGDVRDRNSPVL-----VEPLGDRLVE 618

  Fly   369 SNDSQVSLV----IRQIFSGGDQSIVTTTLFVDKVPPEDFRNYNPKSQILTLTAEVTKQCAQCKQ 429
            |....::|.    :.:..|..||:                                  .|:.|| 
plant   619 SIACGLNLTAAICLHKEISLNDQT----------------------------------ACSSCK- 648

  Fly   430 GLQSDMDLLSSIELIFRSQACWNGSFLLDHDRHFGCSVR---NHGLDLKAAQLA------FDNLR 485
                     |:.....|...|:|...|..:    .||.:   |..|....::|:      ||:|.
plant   649 ---------SAFGFTRRKHNCYNCGLLFCN----ACSSKKAVNASLAPNKSKLSRVCDSCFDHLW 700

  Fly   486 AVENESIRQVIWDNITKELVGSLVCSPADVESMRLYLLLPLYHEFVNSKHYKS--LQVPFANAIF 548
            :: .|..|.|..||.|.                |:.::.....|.:..|..::  ..:|.||.  
plant   701 SI-TEFSRNVKMDNHTP----------------RMQMVTRRVSEDLTEKQSENEMQNLPQANR-- 746

  Fly   549 KLAENPRKVLNKW-LAQTPAEYFEHLVQNFLHVVIHIISFKMGLAAASPSAERRQQLLPYNTELE 612
            .....||     | ....|:.:....:.....:.:.:.:.:......|.|:|..:.|......|:
plant   747 SSDGQPR-----WGQVSGPSLFRFDKISTSSSLNLSVSARRTSSTKISTSSESNKILTEEIERLK 806

  Fly   613 IILKLMKTLCQINNERHDRLNYQI-FYWPDLSDYAD---VQQEYVK----WIMADTARDFN---- 665
            .::|.::..|::.||:.:....:: ..|....:.|:   ..:|.:|    .:.|:..:..|    
plant   807 AVIKNLQRQCELGNEKMEECQQELDKTWEVAKEEAEKSKAAKEIIKALASKLQANKEKPSNPLKT 871

  Fly   666 --ICN---YSFIFDQSAKTA-LLQADQALQMHSAMANAATMAFSFFNYGMPISQFIVLN--VTR- 721
              .||   .|.|||.|.... |.....|...|....:.........|....|...:..:  :|| 
plant   872 GIACNPSQVSPIFDDSMSIPYLTPITTARSQHETKQHVEKCVTKSSNRDSNIKLLVDASPAITRT 936

  Fly   722 ---ENLVQDSLRE-LQHY-------------SQSDLKKP--LKIKFHGEEAE 754
               :|..|||..| ::.|             .|..||:.  .:.:|..:||:
plant   937 GYLQNETQDSSAEQVEQYEPGVYITFTALPCGQKTLKRVRFSRKRFSEKEAQ 988

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826 11/50 (22%)
RCC1 59..110 CDD:278826 9/52 (17%)
RCC1 114..163 CDD:278826 13/58 (22%)
RCC1 167..218 CDD:278826 15/61 (25%)
RCC1 221..270 CDD:278826 16/49 (33%)
RCC1 273..322 CDD:278826 12/48 (25%)
RCC1_2 309..339 CDD:290274 10/29 (34%)
RCC1 327..390 CDD:278826 19/66 (29%)
HECTc 715..1060 CDD:238033 14/62 (23%)
HECTc 739..1059 CDD:214523 5/18 (28%)
AT1G65920NP_176767.1 PH_PLC_plant-like 14..126 CDD:270171
ATS1 <291..646 CDD:227511 97/414 (23%)
FYVE 639..699 CDD:366594 17/107 (16%)
Smc <798..>864 CDD:224117 11/65 (17%)
BRX_N 839..874 CDD:372684 5/34 (15%)
BRX 948..1001 CDD:369842 8/41 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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