DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and RUG3

DIOPT Version :10

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_974971.2 Gene:RUG3 / 836208 AraportID:AT5G60870 Length:452 Species:Arabidopsis thaliana


Alignment Length:384 Identity:111/384 - (28%)
Similarity:175/384 - (45%) Gaps:47/384 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ELYCWGSTSHGQLGLGGIED---------------EQILTPSQIPWTPDTAVQQ----VACGHRH 51
            :|:.||..:.|||| ||||:               :|..:.:|.|...|.....    ::||..|
plant    49 QLFSWGRGASGQLG-GGIEEIRMYPSPVANLLFRSDQSFSLAQTPGRIDADSSSFRIGISCGLFH 112

  Fly    52 TLFLTATGKVYACGSNDYSQLGHDLPTKRPRMSPFL--LIPELQDYVIIQICCGSRHSLALSDWG 114
            : .||..|.::..|..|..:||..     ...|.|:  |.|..:::.|..|..|..||:||:..|
plant   113 S-GLTIDGDLWIWGKGDGGRLGFG-----QENSVFVPNLNPLFEEHSIRCIALGGLHSVALTHQG 171

  Fly   115 QVLSWGDNDCGQLGHAT-DKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWG-SNIY 177
            .|.:||....|.|||.. .:|:|  |:.|.......:..||....|:.|:|..||||.|| ....
plant   172 DVFTWGYGGFGALGHKVYTRELV--PRRVDDSWDCKISAIATSGTHTAAITESGELYMWGREEGD 234

  Fly   178 GQLGV---NSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLND 239
            |:||:   ..||:....:.|.::..|. :|:|:::|||..:..::|.|.::.||.|:..:||..|
plant   235 GRLGLGPGRGPNEGGGLSVPSKVKALT-VPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGD 298

  Fly   240 ETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMVMEL 304
            ......|..:.:|..:.:..:|||...|:.||.||.|.:.|.|.:||||.....|:.:|..:..|
plant   299 NLGGWEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEIEAL 363

  Fly   305 MGSTITQVACGNRHTLAL------VPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGP 357
            ....|..:|.|...:.|:      :...|.::.:|.....|||...     ||::...|
plant   364 ADKKIVFIASGGSSSAAITGWDWFLTDGGELWMWGNAKDFQLGVPG-----LPEIQTTP 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 ATS1 7..352 CDD:444065 109/376 (29%)
RCC1 327..390 CDD:395335 8/31 (26%)
HECTc 715..1060 CDD:238033
RUG3NP_974971.2 ATS1 50..418 CDD:444065 111/383 (29%)
RCC1 392..447 CDD:395335 8/31 (26%)
Blue background indicates that the domain is not in the aligned region.

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