DRSC/TRiP Functional Genomics Resources

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Protein Alignment Herc4 and AT3G47660

DIOPT Version :9

Sequence 1:NP_001261249.1 Gene:Herc4 / 38151 FlyBaseID:FBgn0035207 Length:1062 Species:Drosophila melanogaster
Sequence 2:NP_001325559.1 Gene:AT3G47660 / 823920 AraportID:AT3G47660 Length:990 Species:Arabidopsis thaliana


Alignment Length:586 Identity:139/586 - (23%)
Similarity:229/586 - (39%) Gaps:137/586 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ELYCWG-STSHGQLGLGGI----EDEQILTPSQIPWTPDTAV----QQVACGHRHTLFLTATGKV 61
            :::.|| |...|.|| ||:    ....::|.|.:|....:.|    |.::||..:.:.:|..|::
plant   293 DVFVWGESIGDGLLG-GGMHKSGSSSSLMTDSFLPKVLKSHVALDAQSISCGTNYAVLVTKQGQM 356

  Fly    62 YACGSNDYSQLGHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDND--C 124
            |:.|.....:|||.:.:..|...   ||.|.....:....||..|:.|::..|.:.:|||.|  .
plant   357 YSWGEESGGRLGHGVCSYVPHPK---LIDEFNGSTVELADCGEFHTCAVTASGDLYAWGDGDHNA 418

  Fly   125 GQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSPNDLT 189
            |.||..:.....:..:::.|:....|..|:||..|:..:||.|:|:::|...:|.||   ..|..
plant   419 GLLGLGSGASHWKPVRILGQMEGIYVKAISCGPWHTAFVTSEGKLFTFGDGTFGALG---HGDRI 480

  Fly   190 HCNYPLRLTTLLGIPLAAIACGGNHSFLI-------SKSGAVFGWGRNNCGQLGLNDETNRSYPT 247
            ..|.|..:..|.|......|||..||..:       :.||.:|.||..:.|:||..|...|..|:
plant   481 STNIPREVEALNGCRTIKAACGVWHSAAVVSVFGEATSSGKLFTWGDGDDGRLGHGDIECRLIPS 545

  Fly   248 QLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAG------------AYGQLGHGFSSNEMLPRM 300
            .:..|.|...:.||||...:|.|:..|.|:..|..            ..|.||..|         
plant   546 CVTELDTTSFQQVACGQSITVALSMSGQVYAMGTADPSHDIVRAPSCIEGGLGKSF--------- 601

  Fly   301 VMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKSLMLPQVVIGPWVSPSGSA 365
                    :.:||||..| :|::.|:..||.:|.||:||||...|:...:|.:|         .|
plant   602 --------VQEVACGFHH-IAVLNSKAEVYTWGKGSNGQLGHGDTEYRCMPTLV---------KA 648

  Fly   366 LLQSNDSQVSLVIRQIFSGGDQSIVTTTLFVDKVPPEDFRNYNPKSQILTLTAEVTKQCAQCKQG 430
            |....       :|::..|   |..|.|:.:.|                .:|...:.:|:.|:. 
plant   649 LKGKQ-------VRKVVCG---SNYTATICLHK----------------PITGTDSTKCSGCRH- 686

  Fly   431 LQSDMDLLSSIELIFRSQACWN-GSFLLDHDRHFGCSVRNHGLDLKAAQLAFDNLRAVENESIRQ 494
                     ....:.:...|:| ||...:     .|:.:.   .|.||      :....|...| 
plant   687 ---------PFNYMRKLHNCYNCGSVFCN-----SCTSKK---SLAAA------MAPKTNRPYR- 727

  Fly   495 VIWDNITKELVGSLVCSPA--DVESMRLYLLLPLYHEFVNSKHYKSLQVPFANAIFKLAENPRKV 557
                          ||...  .:|.:|..|..|     .||..:.:..:|.:..:.::...|::.
plant   728 --------------VCDDCYIKLEGIRESLATP-----ANSARFSNASLPSSYEMDEIGITPQRQ 773

  Fly   558 L 558
            |
plant   774 L 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Herc4NP_001261249.1 RCC1 6..55 CDD:278826 15/57 (26%)
RCC1 59..110 CDD:278826 13/50 (26%)
RCC1 114..163 CDD:278826 14/50 (28%)
RCC1 167..218 CDD:278826 16/50 (32%)
RCC1 221..270 CDD:278826 18/48 (38%)
RCC1 273..322 CDD:278826 12/60 (20%)
RCC1_2 309..339 CDD:290274 12/29 (41%)
RCC1 327..390 CDD:278826 17/62 (27%)
HECTc 715..1060 CDD:238033
HECTc 739..1059 CDD:214523
AT3G47660NP_001325559.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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