DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Herc4 and AT3G26100

DIOPT Version :9

Sequence 1:	NP_001261249.1	Gene:	Herc4 / 38151	FlyBaseID:	FBgn0035207	Length:	1062	Species:	Drosophila melanogaster
Sequence 2:	NP_001326163.1	Gene:	AT3G26100 / 822208	AraportID:	AT3G26100	Length:	532	Species:	Arabidopsis thaliana

Alignment Length:	382	Identity:	119/382 - (31%)
Similarity:	185/382 - (48%)	Gaps:	40/382 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MASGKELYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACG 65
            :.|..|:|.:|..:.||||.|..|||..:.|  :.......:.|.|.|...|:.::..|||||||
plant   158 VTSKGEVYTFGYNNSGQLGHGHTEDEARIQP--VRSLQGVRIIQAAAGAARTMLISDDGKVYACG 220

  Fly    66 SNDYSQLGHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQV--LSWGDNDCGQLG 128
            ...:.:..:.....:|..:| .|:..|::..::|...|:..:..||..|:|  .||| || |:||
plant   221 KESFGEAEYGGQGTKPVTTP-QLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWG-ND-GRLG 282

  Fly   129 HATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCG----ELYSWGSNIYGQLGVNSPNDLT 189
            |.|:...|:...::..|....|||||.|..:.||| :|.    .:||.|..:.|:||..|..|.
plant   283 HQTEAADVEPRPLLGPLENVPVVQIAAGYCYLLAL-ACQPNGMSVYSVGCGLGGKLGHGSRTDE- 345

  Fly   190 HCNYP--LRLTTLLGIPLAAIACGGNHSFLISKSGAV--FGWGRNNCGQLGLNDETNRSYPTQLK 250
              .||  :....:|.:....:|.|..|:.::.:.|.|  :||||..|  ||..:|...|.|..::
plant   346 --KYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGC--LGHGNEECESVPKVVE 406

  Fly   251 TLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFS--------SNEMLPRMVMEL--- 304
            .|..:....||.||..:..::::|.|::.|.|....|||..|        :|.:.|.:|..|
plant   407 GLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVLSPTVVTSLKQV 471

  Fly   305 ----MGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGT---RSTKSLMLPQVV 354
                :..::|.....|.||.||..| |:::|||.|..|||||   ::.|...:|:.|
plant   472 NERMVQISLTNSIYWNAHTFALTES-GKLFAFGAGDQGQLGTELGKNQKERCVPEKV 527

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Herc4	NP_001261249.1	RCC1	6..55	CDD:278826	16/48 (33%)
		RCC1	59..110	CDD:278826	13/50 (26%)
		RCC1	114..163	CDD:278826	21/50 (42%)
		RCC1	167..218	CDD:278826	14/56 (25%)
		RCC1	221..270	CDD:278826	17/50 (34%)
		RCC1	273..322	CDD:278826	16/63 (25%)
		RCC1_2	309..339	CDD:290274	12/29 (41%)
		RCC1	327..390	CDD:278826	13/31 (42%)
		HECTc	715..1060	CDD:238033
		HECTc	739..1059	CDD:214523
AT3G26100	NP_001326163.1	ATS1	154..527	CDD:227511	118/380 (31%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1062377at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920